| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_1419 |
|---|
| Symbol | |
|---|
| ID | 6356190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | - |
|---|
| Start bp | 1525388 |
|---|
| End bp | 1526551 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642669030 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_001943458 |
|---|
| Protein GI | 189346929 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.267588 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCTTTT CAAAAACACA GCGCATTATC CTGTTTTCAC TTTTTGCTTC GGCACTGGTT
CTCTTTTTTG TTTTCAGGCC TTCGCCGCTT CCTGTCGATT CAGGTGAAGT GCATAAAGGA
GCGTTGCAGG TGACTCTGGA TGCCGAAGGT TTTACAAGGG TCGACGAGCG TTTCGTTCTT
GCTGCCCCGG TTTCGGGTAT GCTCATGAGA ATTAAGCTCG AAGAGGGTGG AACTGTCCGG
AAAGGCGATC TCGTTGCTGC GTTGCTTCCG CCAGAACTCG ATTCCAGAGA GTATCGCGAA
GCATCTGCCA GGGCAGCATC TGCAAAGGCG CTCTTGAACG AGGCGTTGTC ACGCGAGCGC
AGTGTGAGGC TCGATCTCGA ACAGGTTGAA CGACGCGCGA AGCGGTACAG GAACCTCTAT
AATGAAGGGG CCATCTCAAA AGAAACATTT GAATTGGCTG AGAATGAGGC TGGAATGCGG
CGAAAGGAAG TTGATGCTGC CCGTTCGACG TCGCTATCGG CACGATACGG TTTTGAGGCG
CAGCAGGCCG TTGTCGATCG TCAGATCTCC GGCAGGCCGG TTCAGGTATT TTCTCCGGTT
GACGGAAAGG TGCTGAGGAT ACATGAAAAA AGTGAACGGG TAATCAATGC GGGTACGCCG
CTTGTCGATA TCGGTGATCC GTCGGCTATT GAAATTGTTA TTGACCTGCT TTCCTCGGAT
GCGGTAAGGG TCAAGCCGGG AAATCCGGTC ATCATTGAAG AGTGGGGGGG CAGTGATGTA
TTGAACGCGA CAGTGAAAAC TATTGAGCCA TCTGCGTTTA ACAAGATTTC AGCGCTTGGT
ATCGAGGAAA AGCGGGTGAA CATAATCGCG GCATTGAACA GGTACGAACC CCGTCTTGGA
GATAACTTCC GTGTTCAGGC GAAAATTGTA CTTCGCAGGG AGCAAAGCGT TCTGCAGGTT
CCCGTCAGCA GCCTTTTCAG GGGAACCCGC GAGTGGAAAG TATTTGTGAT AGAGAACGGG
AAAGCCGTCG AAAAAACGGT TGAAATCGGT ATGCGCGGAG CTTTTCAGGC CCAGGTGCTC
AGCGGTCTGA AGGAGGGCGA CAAGGTGGTT GTCCATCCGA CAAACGAGCT GAGCAACGGG
ATGCGTGTTG TCATTCAGAA ATAG
|
|---|
| Protein sequence | MVFSKTQRII LFSLFASALV LFFVFRPSPL PVDSGEVHKG ALQVTLDAEG FTRVDERFVL
AAPVSGMLMR IKLEEGGTVR KGDLVAALLP PELDSREYRE ASARAASAKA LLNEALSRER
SVRLDLEQVE RRAKRYRNLY NEGAISKETF ELAENEAGMR RKEVDAARST SLSARYGFEA
QQAVVDRQIS GRPVQVFSPV DGKVLRIHEK SERVINAGTP LVDIGDPSAI EIVIDLLSSD
AVRVKPGNPV IIEEWGGSDV LNATVKTIEP SAFNKISALG IEEKRVNIIA ALNRYEPRLG
DNFRVQAKIV LRREQSVLQV PVSSLFRGTR EWKVFVIENG KAVEKTVEIG MRGAFQAQVL
SGLKEGDKVV VHPTNELSNG MRVVIQK
|
|---|
| |