Gene Clim_1405 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_1405 
Symbol 
ID6356176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand+ 
Start bp1511102 
End bp1511743 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content52% 
IMG OID642669016 
Productthiamine monophosphate synthase 
Protein accessionYP_001943444 
Protein GI189346915 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0352] Thiamine monophosphate synthase 
TIGRFAM ID[TIGR00693] thiamine-phosphate pyrophosphorylase 


Plasmid Coverage information

Num covering plasmid clones48 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAAGG ATGCCCTGGC AGTGCTGCCG CGTCTCTGCA TAATCAGCAG CGGTAACGAT 
CCGGACGGTT CGGGTCTGCT TATAAGAAGG CAGATCGAGC TGCTCCTCCC TTCACTGCCC 
TGCCTGATAC AGATCAGGGA AAAACATCTC GACGCGTCGA CGCTTTTCAG GCTCAGCCGG 
ACCATGAAAG CGGCCGCTGC CGGCAAAAAC GTGCTGATTT TCCTGAATGA ACGGGCAGAT 
ATAGCTGCAT CTGCAGCCCT TGACGGAGTC CACCTGAGGG AATCGTCATC TCCCCCCGAT 
AAACTCAGAT CCTTTACCGG AAGCATGCTC ATAGGAAAAA GCTCGCACTC TGTGGAATCG 
GCTGTAAAAT CGGCACAATC CGGCGCGGAT TACCTGATTT TCGGTCCTGT TTTCGATACC 
CCATCCAAAA GACAATACGG AAATCCCCAG GGCCTCCTCA AACTTGGGGA AGTCTGCAGA 
TCGGTTTCGA TTCCAGTGTT TGCTATCGGC GGAATCACAC CGGAAAATAC ACCGCTCTGC 
CTCTCAAAAG GCGCATATGG AATTGCTGCA CTCTCGCTCT TTTGCGATAC AGACCGGCTT 
CCCGGATTAC TGAAAACCTT TGAACAGATA CTTGACTCAT GA
 
Protein sequence
MSKDALAVLP RLCIISSGND PDGSGLLIRR QIELLLPSLP CLIQIREKHL DASTLFRLSR 
TMKAAAAGKN VLIFLNERAD IAASAALDGV HLRESSSPPD KLRSFTGSML IGKSSHSVES 
AVKSAQSGAD YLIFGPVFDT PSKRQYGNPQ GLLKLGEVCR SVSIPVFAIG GITPENTPLC 
LSKGAYGIAA LSLFCDTDRL PGLLKTFEQI LDS