Gene Clim_1360 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_1360 
Symbol 
ID6353770 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand
Start bp1458305 
End bp1461538 
Gene Length3234 bp 
Protein Length1077 aa 
Translation table11 
GC content63% 
IMG OID642668969 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_001943399 
Protein GI189346870 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCTGC ATCTCTATAC CGGAAACCGG ATGGAAACGC TTGTCGATGC GCTGGCGGAA 
GTTCTGCGTC GCAACCCGCC ATCCGTTTTC GAACCCGAGA AAATAGTGGT GCAGAGTCGC
GGCATGCAGC GATGGATTTC CATGGAACTT GCCCGGCGGT TCGGCGTCTG GGCCGGTGCG
GAGTATCCCT TTCCGAACAG GCTGCTGCAG CAGCTTTTCG AGGAGATGGA ACTGACGCAG
CCCGATTCGG AGAAGTTTTC AAAAGAGACG ATGTGCTGGA CACTCATGCG CCTCCTGCCT
GAGATGCTCG ATCGTGAGTT ATTTTCGCCC CTTCGCTCCT ACCTGCGGAA CGACCGGGAG
GGGCTCAAGC TCTTTCAGCT CTCCGGCCGC ATCGCCGATA CCTTCGACCA GTACACCCTT
TTCCGTACCG ACCTTCTCGC CGCATGGGAA GAGGGGCGAA ACGACGGGGC CCGCGACTGG
CAGCCGGAAT TATGGCGGGC GCTGGTTGCA GAGAGTTCCG GCAAGCATCG TGGCCGTCTG
AAAACCGAGT TCTGCCTCAA GGTTCGGCAC GCGCCGCTTC CTGCCGCCTT TCCGAAGCGG
ATTTCTCTCT TCGGCATCTC CTACATGCCG CCCTACCATA TCGGGATGAT CGAAGCCCTG
GCGACGAGGA TACCGGTCAA CATCTTCCTG CTGAGCCCGA CGCAGGAGTA CTGGTCGGAT
ATCGTTTCCC GCAGAAAGCT CTTCCGGATG AGCGAGGGCG AACGGGAACT GAGCACCGAG
GGCAATCCGC TGCTTGCCTC GCTCGGCAGA AGCGGCCGGG AGTTCGCCGA TCTCCTGCTC
GAAGCCGGCG GAATCGAAAA CGAGCACGAC CTTTACATCG AACCCGCCGA CGACACCCTC
CTGCACGCCC TGCAGTCCGA CATGCTCAAC CTCAGCGGTA CGGGGGAGGA GGGGGAGCGC
CGTTCCTCGC CGGATCCCGC CGATCGTTCG GTTCAGGTTC ACTCCTGCCA CAATCCGCTG
CGCGAGGTCG AGGTGCTGCA CGACAACCTG CTCGATCTTC TCGAACATCT TCCCGGACTG
GAACCTCGTG ATATCGTCGT GATGACGCCC GAGATCGAGA TCTATGCCCC TTACATCGCC
ACGGTTTTCG GTGTTTCCGG CGAGGGCGTA CCGCGCCTGC CGCATTCGAT AGCCGACCGC
CGCATGCTCG ACGAGGGTGG CATCGCTCCG GCCCTGCTGA AGCTGCTCGA GCTCTACGGC
AGCCGTCTCC CTGCTCCGGA GATTTTCGAT CTGCTCTCTT CGCCGCCGGT GAGCCGACGC
TTCAGGCTCG ACGAAGAGGA ACTCGATACG ATTCGCGTCT GGGTAGCCGA TACGCGAATC
CGCTGGGGTA TGGACGAACG TTCGCGAAGC GGCCTCGGCC TGCCCCCCTT CCGCGAAAAC
TCCTGGAGGG CGGGGCTCGA GCGGCTGCTG CTCGGCTATG CCATGCCGGA CGAGGGGGTG
CTCTCGGACG GGGTGCTGCC GTTTGACGTC GAGGGCGACG CGGAAACCCT CGGCAAGCTC
GCCGATTTCA TCGATGCCGT CGATGCGCTC TCGGCAAGGT TCGATCGGCC ACGCACGCTC
GACGGATGGC GGGATCATTT CATCTGGATG CTCGACACCT TTATCGACGC CGATGAGGAG
GTCGAAAGGG AGCTCTCGCA CATCGCCGCC GAAATCGACA GACTGACGGA ACTCGCCGCA
GAGGCCAATT TCGGGGGCGA GACGGCGGCC CCGGTGATGA TCGCCTGGCT GCGCGGCCGT
CTCGAAAAGT TCGAGATGGG GCTTGGCTTC ATGACCGGCG GCATCACCTT CTGCGCCATG
CTGCCGATGC GCAGCATTCC GTTCCGCGTG GTTGCCATGA TCGGCATGAA CGACGGGGCT
TTCCCCCGCC AGCAGCGTCT GCCGGGTTTC GACATGATGT CGAGGGAACC GCGCAAGGGT
GACCGCTCCG TCCGCGGCGA CGACCGTTAC CTCTTTCTCG AATCGATCCT CTCTGCACGC
GACGTCCTCT ACCTGAGCTA TGTCGGCCAG AGCATCAGGG ACAACACGCC ACAGCCGCCC
TCCGTGCTGG CGAGCGAACT GCTCGATGCC ATAGAGCGCG GTTTCGCATT TCCGGAAGGG
GAGGACGCGA TATCGCGCAT GGTTGTCCGG CACAGGCTCC AGGGGTTCAG TCCCGCATAC
TTCACCGAAG GGTCGCCGCT TTTCAGCTAC TCGGCCGATA ACTTCCTGGC GCTTGAACGT
CGCCATGAGC GCAATGCAGG TAATGGGAGC AGGGGGCGAA ATCCGGTTGA AGCCCGTCCC
TTTATGGACG AACCGCTTCC TGAGGCTGAC GACGGGGATC GCCGGGTGAC GATCGACGAT
CTGGTGAAGT TTTTCGCCAA CCCCTCGGCA TTCTTTCTCG ACCGGCAGCT CGGGCTCAAA
CCCTCTGCAG CGCTTCGTCC GCTCGAAGAG CGCGAGCCCT TCGGCGCCGA CGGCCTCGAC
GCATACCTGA TGCGCCAGGA ACTGCTTGCA GCGGTGCTCG AAGGGGGAAA AGAAGAGGCT
CTCCTGCCCC TGTTCCGGTC GAGAGGTCTC TTGCCGCCGG CCCGACACGG CGAATTGCTC
TTCGGAGAGC TGCTTGCCGA GGTGAGGGAG TTCGCCGACA GGCTTCCGGA GCTTAAGGGG
AGCGCTGCGC CTGCCGTACT TGAAGCCGAT CTCGACATCG GGGGATTCCG GCTAACCGGC
ACGCTCGACC ATCTTCTGCC CTCCGGGCAG CTGCTCTACC GCTGCGCGAA GATGCGGGAG
AAGGATCGCA TCGGTTCATG GATTCTGCAC CTCGTGCTCG GTGCGTGCAG TCCGGGTCAT
ATGCAGGAGA CCCGTCTCGT CATGCTCGAC CGTGCCGTCA GGTACACTCC CGTAGCCGAC
GCGGCAGGCA GGCTCGAAAC CATGCTCTCG CTTTACCGGC AGGGGCTCAT GGAGCCGTTG
CCCTTCTTCC CCCGCGCCTC GACGGCCTGG GCAGGCAAGG CGGAAAAAAC GGAGCGCGAG
CGTACCGAAG CCGCCCTGGC CGCATGGCGT GAAGGGTACG GCGGACGCGA AGGCGAGGGT
GCCGATCCGG CCTTCCGCCG CTGTTTCGGC ACGGAGCCGC CCCTCGGCGA GCGCTTTGCA
GCCATTGCCG AAGAGGTGTT ATTACCGATG CTTGAACACG GAGGGAAGGG ATGA
 
Protein sequence
MTLHLYTGNR METLVDALAE VLRRNPPSVF EPEKIVVQSR GMQRWISMEL ARRFGVWAGA 
EYPFPNRLLQ QLFEEMELTQ PDSEKFSKET MCWTLMRLLP EMLDRELFSP LRSYLRNDRE
GLKLFQLSGR IADTFDQYTL FRTDLLAAWE EGRNDGARDW QPELWRALVA ESSGKHRGRL
KTEFCLKVRH APLPAAFPKR ISLFGISYMP PYHIGMIEAL ATRIPVNIFL LSPTQEYWSD
IVSRRKLFRM SEGERELSTE GNPLLASLGR SGREFADLLL EAGGIENEHD LYIEPADDTL
LHALQSDMLN LSGTGEEGER RSSPDPADRS VQVHSCHNPL REVEVLHDNL LDLLEHLPGL
EPRDIVVMTP EIEIYAPYIA TVFGVSGEGV PRLPHSIADR RMLDEGGIAP ALLKLLELYG
SRLPAPEIFD LLSSPPVSRR FRLDEEELDT IRVWVADTRI RWGMDERSRS GLGLPPFREN
SWRAGLERLL LGYAMPDEGV LSDGVLPFDV EGDAETLGKL ADFIDAVDAL SARFDRPRTL
DGWRDHFIWM LDTFIDADEE VERELSHIAA EIDRLTELAA EANFGGETAA PVMIAWLRGR
LEKFEMGLGF MTGGITFCAM LPMRSIPFRV VAMIGMNDGA FPRQQRLPGF DMMSREPRKG
DRSVRGDDRY LFLESILSAR DVLYLSYVGQ SIRDNTPQPP SVLASELLDA IERGFAFPEG
EDAISRMVVR HRLQGFSPAY FTEGSPLFSY SADNFLALER RHERNAGNGS RGRNPVEARP
FMDEPLPEAD DGDRRVTIDD LVKFFANPSA FFLDRQLGLK PSAALRPLEE REPFGADGLD
AYLMRQELLA AVLEGGKEEA LLPLFRSRGL LPPARHGELL FGELLAEVRE FADRLPELKG
SAAPAVLEAD LDIGGFRLTG TLDHLLPSGQ LLYRCAKMRE KDRIGSWILH LVLGACSPGH
MQETRLVMLD RAVRYTPVAD AAGRLETMLS LYRQGLMEPL PFFPRASTAW AGKAEKTERE
RTEAALAAWR EGYGGREGEG ADPAFRRCFG TEPPLGERFA AIAEEVLLPM LEHGGKG