| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_1281 |
|---|
| Symbol | |
|---|
| ID | 6355382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | - |
|---|
| Start bp | 1381492 |
|---|
| End bp | 1382565 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642668897 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_001943327 |
|---|
| Protein GI | 189346798 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.036609 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATAT CGATACCCAG CATCATCAGT AAACCCGCAG CCATCATCGC AGCGGTGATC
GTCGTGCTCC TTTTTATTGG ATACCGGTTC TTTTTCGGCG CAGCAGCTGT CGAGATCCTG
ACCGTGCAGC AGGGCTCGGT AGAAGAACTT GTGCACGGCC CTGCCCGAAT CCGAGCCAGG
GTGCCGGTAT CGGTCAGCTC CCGTTTTGCT GCTGAAATCC TCGATATCAC GGTCGATATA
GGCGACAGGG TGCATGCCGG GCAGCTGCTT GTGCGCCTCG ACGATCGCGA CCTGCAGGCC
AGAACGTCGG CATCGCGTGC CATGCTTGCC CGAGCGGAGG CCGATCTTGC GCTTGCAGGG
AGCAACGAAC AACGCGACCG CGAGGTATTC GAAAAGGGGT ACATCAGCCG TGCAGCCATG
GAGGCGACCT CTACCCTGCG CAGGCTCAAA CAGGCCGAAG TTACCGTCGC AAGAGAGGAG
GTCTCATACG CCGCCACCCA GTCCGAACAC GCCATGCTCA TCGCCCCCAT GGATGGCATC
GTTACGGCAA GGCTGGCTGA AGCAGGCGAC AATGCTGCAC CGGGGGCTCC AATTCTGCGC
ATGGTCGATC CCCGTACCCT TCAGGCGGTT GCACTGATTG ACGAAACCGT TGCAGGCAGC
ATCAGACCGG GCATGCCGGC CACTATCCGC AAGCGCACCG GCGGATCAAG TGCCGGACGT
GTCTCGCGTA TCCAGCTCGA AGCGAATGCC GCCGCACGCG AGTTCCAGGT GGAGGTGGAC
TTCGTGGAGC CTCCCGCTCG CTTTGCCATC GATCAGGAAG CCGAAGTCAC CATCACGACA
GGCAGGCAGA AGGGGATCGT TATACCGCTT ACCGCACTGC GGCAGCAGGA GAGCGGCCGG
GATGGCGTGC TTGCAGTTCG CAGTGGACGT GCGGTTTTCC AGCCGGTTGA AACCGGTGTT
TCCGACGGGA AGCGCGTCCT CGTCAAAACG GGGATCAAGA GTGGTGAACA GATTGTACGC
AATGCAACGG GCATTAAACC CGGAAGCCGC GTACGCGCAA AAGCAGGGGA GTGA
|
|---|
| Protein sequence | MSISIPSIIS KPAAIIAAVI VVLLFIGYRF FFGAAAVEIL TVQQGSVEEL VHGPARIRAR
VPVSVSSRFA AEILDITVDI GDRVHAGQLL VRLDDRDLQA RTSASRAMLA RAEADLALAG
SNEQRDREVF EKGYISRAAM EATSTLRRLK QAEVTVAREE VSYAATQSEH AMLIAPMDGI
VTARLAEAGD NAAPGAPILR MVDPRTLQAV ALIDETVAGS IRPGMPATIR KRTGGSSAGR
VSRIQLEANA AAREFQVEVD FVEPPARFAI DQEAEVTITT GRQKGIVIPL TALRQQESGR
DGVLAVRSGR AVFQPVETGV SDGKRVLVKT GIKSGEQIVR NATGIKPGSR VRAKAGE
|
|---|
| |