| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_1121 |
|---|
| Symbol | |
|---|
| ID | 6355763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | + |
|---|
| Start bp | 1221672 |
|---|
| End bp | 1224431 |
|---|
| Gene Length | 2760 bp |
|---|
| Protein Length | 919 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642668738 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_001943169 |
|---|
| Protein GI | 189346640 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA AAATACGGAA AGTGTTTGCC TTCTGTTTTC TTGCGCTCCT TAATGGAGTC
GTTTCCGGAA CGGTAACGGC AGCTGAACCG AAAACCGGAG TTGTATCACG ACATGTTGTA
ACCGGCAGGG TTTTTGATCA CTCGGACGGA ATGTCTCTGC CGGGTGTAAG TGTTTCGGTA
AAGGGGAGCC GGCAGGGAGC CATCACTGAC CAGTCAGGAT ATTTCAAGAT CGACAATATT
GCAGGTAACT CCGTCGTTGT CGCGGTATCC TGTCTTGGCT ATGCATCCGC AGAGTATCCT
GTTTCTTTTC TGTCAGGCAA AGCATCTTCG CTTGCCATCG GATTGAAGCC GGAACTGCTG
ATGGGCCGGG AGGTTGTCGT TATCGGTGAA CAGCTCAAAG GGCAGGCGAA GGCGCTTAAC
CAGCAGAAGA ACAGCGACAA TATCACCAAT ATTATTGCTG CCGACCAGAT CGGCAAATTT
CCCGATTCAA ATATGGGGGA TGCCCTCAAA CGCATTCCGG GCATCAGCGT TTTCGGTGAT
CAGGGTGAAG CCCGCTTTGC TCATATACGC GGAACCGAAC CGCGGTTCAA CTCGGTGATG
ATCAACGGCG AACGAATTCC GTCTGCCGAG GCCGAAGGCA GGAGCGTACA GCTTGACCTG
GTTCCGGCCG ATATGATACA GACGATTGAG GTCAATAAAA CGTTTGCTCC GGACATGGAT
GCAGACGCAA TCGGCGGCTC TGTAAACCTT ATCACAAAAG TGCCGTCCGG AAAGCGTGTC
TCGGTTACGG CCGCAGGTGG AGCCAATCTG ATCGAGGGAA CGGGCGGGGG ACGCTACCAG
TTTGCAGGGA CGTACGGTGA CCGTTTTTTC GACGGCAGGC TTGGCGTGGT GGTGAGTGCT
TCATATTATG ACAACTCTTT TGGTTCTGAC GATATTGAAG CGGCTTGGGA GAGAGATGAA
GACGGCAAGG CTGTGCTCGA CGAGTTTGAA ATCCGTACCT ATGAAATTCA GCGGATCCGC
AGAAGTCTGT CGGCAGGTCT CGATTACCGG TTCAATGAAA ATCATCTTCT GAAATTTACC
GGCATATATA ATTGGCGTGA AGACTGGGAG AATCGGTATA GGGCAAGCTA CAAAGATCTT
CTTGAGGATA AGGCGAAAAT CGTCTATCAG GACAAGGCTG GCGTCGATAA GAACGCCCGG
CTCGAAGATC AGAAAATGAT GTCGTTCGCT CTGGGCGGAG AACATGATTT CGGCCGTCTT
TCCATCGATT GGCAGGCATC CTTTGCAAAG GCTTCCGAAG AGCGTCCGAA TGAGCGATAT
ATCGATATCA TTGCGGAGGA AATAGATGAT TTTGCCGTCG ATGTATCCAA CCCCCGAAAG
CCGCTCGTTT CCGTTTCAGA TGCCTTTAGC GGAGGTATTT CGGATAATGG GAAGTGGAAA
CGCGACGAAT TGACGGAAGA GTACCAGTAT AGCGAGGATA TCGATACGAA TTTCGCCCTG
AATCTCAAAT ACAGGGTATC CGATGCGGTT AAGCTTAAAT TCGGCGGCAG GTTTCGTGAC
AAATCCAAAA AACGCAATAA TGAGTTCTAT GAATACGATC CTGTCGATGG GGATGCATTC
ATGGATTCCG TCTATGGCAA TCTCACCGAT CTTGACAAGG AACGTTTTCT GGCCGGAGAA
AAGTACCGGC CCGGCAATTT TGTGAGCAGT GACTTCCTTG GTTCCCTCGA TCTTGATTCC
GACGATTTCG ATAAAGAAGA GGCTCTTGAA GAGCTTGCGG AAAACTTTAC GGCGAAAGAG
CAGATCAAAG CGGCTTATGC CATGGCAACA TGGGACGCCA CGGAAAAGCT CCGTATAATC
GGCGGCGTCA GGCTGGAGCA TACGCGAAAC GAGTATGACG CATTCTTTTA TGACGACGAT
GCCGATACGC TGACGCCTGT ATCCGGAGCG CCGAAGGAGT ATTACAACGT TCTGCCCTAT
ATCCATCTGC TTTACAAGCT CGACGACAGG ACAAATATCC GGTTTGCCTA TACGCACTCG
CTCGCAAGGC CGGATTATTT CGATCTTGCC CCTTACCGCC AACTTGACGA TGATGCGATC
TATATCGGCA ATCCCTCGCT TGAGCCGACG ATCTCGAAAA ATATCGATGT TATAATCGAA
AGGTACCTCG GCAATGTCGG CGTGCTTTCG GCAGGTCTGT TTTACAAGGA TATTTCAGAT
TTCATCGTTA CCAGAAAAAC GACCGATAGC GCTTATGCTC TCTATCAGCC GGTTAACGGC
GGTGACGGCT CGGTCAGCGG CATCGAGCTG TCCGCTCAGT TTCAGATGCC GTTTCTCAAG
GGTCTCGGGC TTTACCTGAA CTATACGTAC ACCGATTCCC AGATCAGCAA TTTCAACATC
GAAGGCAGGG AAACAGATGA TTTGCCGCTT CCGGGAAGTC CCGAACATAC GTTCAATGCA
TCGCTTTCTT ACGAAAATGG ACTATTTACC GTTCGTTTTT CAGGAAACTA CCATAGCGAT
TTCATCGATT CCGAAGAGGG CTCGATCGGG GTGAACAGTT GGGAAGACCG CTATTACGAC
AGTTCATTCA CGCTTGATTT GAATGGGGCC TATCGCTTCA GCAAAGAGTT GCAGCTGTTT
TTTGAAATCA GTAATCTCTC CAATCAGCCC ATGCGTTTTT ACCAGGGAGA GAAACAGTAT
GTCGCTCAGG AAGAGTGGTA CGACCGTAAA TTCCTGGTTG GCCTGAAAGC CGATTTATAA
|
|---|
| Protein sequence | MKKKIRKVFA FCFLALLNGV VSGTVTAAEP KTGVVSRHVV TGRVFDHSDG MSLPGVSVSV
KGSRQGAITD QSGYFKIDNI AGNSVVVAVS CLGYASAEYP VSFLSGKASS LAIGLKPELL
MGREVVVIGE QLKGQAKALN QQKNSDNITN IIAADQIGKF PDSNMGDALK RIPGISVFGD
QGEARFAHIR GTEPRFNSVM INGERIPSAE AEGRSVQLDL VPADMIQTIE VNKTFAPDMD
ADAIGGSVNL ITKVPSGKRV SVTAAGGANL IEGTGGGRYQ FAGTYGDRFF DGRLGVVVSA
SYYDNSFGSD DIEAAWERDE DGKAVLDEFE IRTYEIQRIR RSLSAGLDYR FNENHLLKFT
GIYNWREDWE NRYRASYKDL LEDKAKIVYQ DKAGVDKNAR LEDQKMMSFA LGGEHDFGRL
SIDWQASFAK ASEERPNERY IDIIAEEIDD FAVDVSNPRK PLVSVSDAFS GGISDNGKWK
RDELTEEYQY SEDIDTNFAL NLKYRVSDAV KLKFGGRFRD KSKKRNNEFY EYDPVDGDAF
MDSVYGNLTD LDKERFLAGE KYRPGNFVSS DFLGSLDLDS DDFDKEEALE ELAENFTAKE
QIKAAYAMAT WDATEKLRII GGVRLEHTRN EYDAFFYDDD ADTLTPVSGA PKEYYNVLPY
IHLLYKLDDR TNIRFAYTHS LARPDYFDLA PYRQLDDDAI YIGNPSLEPT ISKNIDVIIE
RYLGNVGVLS AGLFYKDISD FIVTRKTTDS AYALYQPVNG GDGSVSGIEL SAQFQMPFLK
GLGLYLNYTY TDSQISNFNI EGRETDDLPL PGSPEHTFNA SLSYENGLFT VRFSGNYHSD
FIDSEEGSIG VNSWEDRYYD SSFTLDLNGA YRFSKELQLF FEISNLSNQP MRFYQGEKQY
VAQEEWYDRK FLVGLKADL
|
|---|
| |