Gene Clim_0927 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_0927 
Symbol 
ID6354164 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand+ 
Start bp1009061 
End bp1009684 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content52% 
IMG OID642668554 
ProductCRISPR-associated protein Cas1 
Protein accessionYP_001942985 
Protein GI189346456 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCTGCA ACCTCGACAT CATGGCCGAT CTTCTCCTCA AGGCCGAAAC CTCCACAGAC 
ATCGACGTAC TGCGAGGTCT CGAAGGCAAG GCTTCGGCTC TCTACTTCGA GTGTTACGGC 
ATGTTTTTCG GCAAAAACCT GCCGTTCCAT ACAGCTTCGT TTCTGCGGGT TCGACGTCCG 
CCAACCGATC CGGTCAACAG CCTGCTCAGT TTCGGCTACT CGCTCCTGCA TACCAACGTA 
TTCTCAATGG TGCAAATGAG CGGCCTCAAC CCCTATATCG GCTTTCTCCA TGCAGAACGA 
AAAGGCAATC CCGCCCTGGT CAACGATCTC GTCGAAGAGT TCCGCACCGT AATCGACTCA 
CTGGTACTCT ATACCATCAA CAGGGGTCTT CTGCATGAAA ACGACTTTTA CTATCGCAAA 
GATCAGCCGG GCTGCTTTCT CTCGAACGAC GCCCGAAAAC GTTTTTTACA GATTTTCGAA 
ACAAGAATGT GGCAGGAATC CCGGGACGGC TACACCGGCA AAACGCTCAA CTTTCGGCGG 
CATATCGAAA AGCAGGTGAG AATCATGCGG GATGTCATAT CCGGAACCCG AACGCAGTAT 
GACCCGTACA AGCTGGTATG GTGA
 
Protein sequence
MTCNLDIMAD LLLKAETSTD IDVLRGLEGK ASALYFECYG MFFGKNLPFH TASFLRVRRP 
PTDPVNSLLS FGYSLLHTNV FSMVQMSGLN PYIGFLHAER KGNPALVNDL VEEFRTVIDS 
LVLYTINRGL LHENDFYYRK DQPGCFLSND ARKRFLQIFE TRMWQESRDG YTGKTLNFRR 
HIEKQVRIMR DVISGTRTQY DPYKLVW