Gene Clim_0448 details

Gene Information

• Locus tag: Clim_0448
• ID: 6354443
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: +
• Start bp: 508433
• End bp: 510424
• Gene Length: 1992 bp
• Protein Length: 663 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 642668079
• Product: hypothetical protein
• Protein accession: YP_001942520
• Protein GI: 189345991
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3064] Membrane protein involved in colicin uptake

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.152935
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAATCT GCAACGAAGA GCCAATTCGC ACCCTCGCCT ATCAGCTCTG GCTCGATCGC 
GGCGCACCTT TCGATAACAC TCAGGATATC GACTGGCTGG AGAGCGAACG AATAATTTTA 
TCCCGGTCTA TTGATCCCGT AATTGACCCG GTCGTGATCG AACCGGATGA AACGGACTCT 
TCCGCAGTGG TTCCTGCTCC CCCTGAAGTT ACCGGTCCGG CAGGGAGAAC GAACAGATGG 
ATGCAGGCGC ATTGGGAGCG GATCGGCCGC AAACCGCTCA AGGAGCTTTG CCTGCCGAGT 
ACGCACGATT CCGGAACCTA TCGGCTGGAT CTGAAACTCG CTCCGGATGC AGCGGATCTC 
ATAAAGACGC TCTATGACTA TGCCGATACC GATAACAATG CGACCGGCGT TCGCAAGTAC 
ATCCGGGGGA TGGCCGTCTG CCAGAGCCTC ACTATCCGGG AACAGCTCGA CAGCGGTATT 
CGCGTTATCG ATCTGCGTGT CTGCAAGGTG GACGGCGTGT ACTATTGCTG CCATGCCCTC 
CTTGGGGACG AAATACGCGT GCTCCTGAAG GATATGGCCG AGTTTCTCGC CGCAAATCCC 
TATGAGGTTG TTTTTGTGAA GGTCGGCCTT AAGAAGATGA GCGACGCGGA AGAAACAGAG 
GCGTGGTCGT ATCTGGTGGA GAACACTGCG CCGTATGGCA TAAAATACCC AAAGGATAAG 
GTTGAAGGCG ACAAAAGCCC GATCGATCCG GATTTTTCAA TGGAGACGCT TGCTTCGCTG 
AAGGCAAATA AAGATCGTCG GTGTCTGCTG TTATCGGATG ACTATTTTTT GAGCAATTAC 
TCTGACGAGA TTACAACCAC GGATGGAGTT ATCTCCCGGC TGGAAAGCAA GACAACGGAT 
ATCGACGGGG AAGAGCGGGC GAATCGCGAG GCGAAGAGAG AGAGCGGAAA ACCGACTGCC 
ATAGATCGCA GGCTTTTCGA AGCGCAATGT TTTCGGCCTA CGAGCTCGTT CAATTACGGG 
GCGGGATATA TTCAGGCGGA AGGCGCAATT TCGCTTGGAG CGCTGGCCGG TCTTGCGGGA 
CTATCATTAA ATTACGTTCC GTTACTGAAG ACGGTGTTCA AGGGCGATGA GCATACTCCT 
GTTCCGGCAA ACCTTCATGA AAACGCGCAA AACTCGAGAA GTATCGTTCG GGAGTACTTT 
ACCTGGCTTG CCGGCAATCC CCATATAGCC CGTCCGCAGG TTATCAACTG CGACTATTTT 
CAGGAGGTTC CGCTTGTCGA TATCGCCATA CAGATCAGCA TAGGTCAGCC CGTTCCCGAT 
CTTTCGGGGG TTCAGGATAT TCCGGTTCCG GAACTCAGGA TGGACTGGTT CACGGCGACG 
GTGGGCTGGG TTCCAAATCT GGTGGCTTTT GCCGCAATGC TGGCGGGTGT GGGTTGCTGC 
GATCTTGGAA GGTACCTGGA CGATAACATT CCCGGTATTA CCGGAGATGT GCTCGGTGCC 
GCTCTGAAAG GAGCGGGATA TGCCTGTGGC GAAGTTGCTC AAACCATCCA TACCGTTCTG 
AAACTTACTG CCGACGAGCT GAACACGGTG CTTCGTCAGA TCGGGTATGC ATCCGATGAA 
ATCGAACAGG CATTCGTCAC CATGGGAGAG GGATTTGTGG ATTTCTTTTC CGATGCCGGA 
GAGGAAGCCG AAAGGATAGC GATAGAGGCC GCCCGATTGG CGGAAGAGGC CGCCCGACAG 
ACAGAAAATG CTGCCAGGAT TGCTGCTGCG GAGACCGCAA GAGTAGCCGA AGAGGCTGCC 
CGGCAAGCCG AGGAAGCGGC CCTGATTGCA GCAAGGGAGG CCGAGAGGAT AGCCCTCGAA 
ACTGCACGGG TTGCCGAGGA AGCGGCAAGA GCGACAGCAA GGGAGGCTGA GCGGATAGCC 
CGTGAAGCCG CACGGGTTGC CGAGGACGCG GCAAGGGCGA CTGCGAATGC ATTGAATCCG 
ACAAGGTGGT AA 

 

Protein sequence

MQICNEEPIR TLAYQLWLDR GAPFDNTQDI DWLESERIIL SRSIDPVIDP VVIEPDETDS 
SAVVPAPPEV TGPAGRTNRW MQAHWERIGR KPLKELCLPS THDSGTYRLD LKLAPDAADL 
IKTLYDYADT DNNATGVRKY IRGMAVCQSL TIREQLDSGI RVIDLRVCKV DGVYYCCHAL 
LGDEIRVLLK DMAEFLAANP YEVVFVKVGL KKMSDAEETE AWSYLVENTA PYGIKYPKDK 
VEGDKSPIDP DFSMETLASL KANKDRRCLL LSDDYFLSNY SDEITTTDGV ISRLESKTTD 
IDGEERANRE AKRESGKPTA IDRRLFEAQC FRPTSSFNYG AGYIQAEGAI SLGALAGLAG 
LSLNYVPLLK TVFKGDEHTP VPANLHENAQ NSRSIVREYF TWLAGNPHIA RPQVINCDYF 
QEVPLVDIAI QISIGQPVPD LSGVQDIPVP ELRMDWFTAT VGWVPNLVAF AAMLAGVGCC 
DLGRYLDDNI PGITGDVLGA ALKGAGYACG EVAQTIHTVL KLTADELNTV LRQIGYASDE 
IEQAFVTMGE GFVDFFSDAG EEAERIAIEA ARLAEEAARQ TENAARIAAA ETARVAEEAA 
RQAEEAALIA AREAERIALE TARVAEEAAR ATAREAERIA REAARVAEDA ARATANALNP 
TRW