Gene Clim_0323 details

Gene Information

• Locus tag: Clim_0323
• Symbol: rho
• ID: 6353840
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: +
• Start bp: 357766
• End bp: 359055
• Gene Length: 1290 bp
• Protein Length: 429 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 642667952
• Product: transcription termination factor Rho
• Protein accession: YP_001942396
• Protein GI: 189345867
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0180092
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGAACA ATTCGGTTTC CAAGGGTCTG GACATCAATG TACTCCAGAA AAAGAAAGTG 
TATGAGTTGA ATGCTCTTGC AAAAGAAATA GGGGTATCTG CGGCCGGCTT ACGGAAAGAA 
GAGCTGATAT TCAAGATAAT AGAGGCACAG TCACAGAAAA ATACGGATCC TGAAGGCGCC 
CAGGTGATGG TCAATACCGG AGTTCTGCAG GTTATTCCTG AAGGATACGG ATTTTTGCGT 
TCCGCAAATT ACAACTATCT CTCCTCTCCT GACGATATCT ATGTTTCTCC GTCCCAGATC 
AAGCGTTTCA ATATGCGAAC CGGTGATACC GTATCCGGTC AGGTGCGGGC TCCGAAAGAG 
GGTGAGCGTT TTTTTGCCCT GCTGAAAATC AATACCATCG ACGGAAACGA TCCTGAAATC 
ACCAGGGAAC GGCCTTTTTT TGAAAACCTA ACCCCGCTCT TTCCCAATGA ACGCCTGAAG 
CTTGAAACCC GCCAGACGGA GTATTGCGGC AGGATCATGG ATATCTTCAC TCCGATCGGC 
AAGGGACAGC GCGGTCTGAT CGTCGCACAG CCGAAAACAG GAAAGACCAT GCTGCTGCAG 
ATGATCGCCA ATGCGATCAT TAAAAACCAT CCCGAAGTTT TTCTGATCGT GCTTCTGATC 
GATGAACGTC CCGAAGAGGT TACCGACATG GCGCGCAGCG TCGAGGCTGA AGTGGTGAGT 
TCCACCTTCG ACGAGGATCC CGAGCGTCAC GTCCAGGTTG CCGATATGGT GCTTGAAAAG 
GCCAAGCGGC TTGTCGAAGT AGGAAGGGAT GTGGTGATTC TGCTCGATTC CATCACCAGG 
CTCGCTCGTG CGCACAATAC CATCATTCCT CACTCCGGCA AGATTCTTTC CGGCGGTATC 
GATGCCAACG CGCTCACCAA ACCGAAACGT TTCTTCGGTG CGGCCCGCAA CATCGAGGAG 
GGAGGCAGCC TCACCATCAT CGCTACGGCG CTTGTCGATA CCGGCTCCCG GATGGATGAC 
GTTATTTTTG AGGAGTTCAA GGGTACCGGT AACATGGAGC TTGTGCTCGA TCGCAGGCTT 
TCCGAACGCA GAATTTTTCC GGCCATCGAT ATTCTCCGTT CCGGAACCCG GAAGGAGGAA 
CTGCTCTTCA GTCAGGAAGA GCTGTCGAGA ACCTGGCTGC TGAGAAAATA CCTTGCAGAC 
AAGAATCCTG TCGAGTGCAT GGAGTTCATG CGCGAAAAAA TGAGTGACAC AAAGGACAAC 
AAGGATTTTT TCAAATACAT GAACGCTTGA 

 

Protein sequence

MSNNSVSKGL DINVLQKKKV YELNALAKEI GVSAAGLRKE ELIFKIIEAQ SQKNTDPEGA 
QVMVNTGVLQ VIPEGYGFLR SANYNYLSSP DDIYVSPSQI KRFNMRTGDT VSGQVRAPKE 
GERFFALLKI NTIDGNDPEI TRERPFFENL TPLFPNERLK LETRQTEYCG RIMDIFTPIG 
KGQRGLIVAQ PKTGKTMLLQ MIANAIIKNH PEVFLIVLLI DERPEEVTDM ARSVEAEVVS 
STFDEDPERH VQVADMVLEK AKRLVEVGRD VVILLDSITR LARAHNTIIP HSGKILSGGI 
DANALTKPKR FFGAARNIEE GGSLTIIATA LVDTGSRMDD VIFEEFKGTG NMELVLDRRL 
SERRIFPAID ILRSGTRKEE LLFSQEELSR TWLLRKYLAD KNPVECMEFM REKMSDTKDN 
KDFFKYMNA