Gene Clim_0272 details

Gene Information

• Locus tag: Clim_0272
• ID: 6353789
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: +
• Start bp: 308490
• End bp: 310394
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 642667902
• Product: ABC transporter related
• Protein accession: YP_001942346
• Protein GI: 189345817
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTGA TTTTTCGAGT ACTTGCCTAT CTCTCCCCTT CCAAAGGCAA GGTTCTGCTT 
GTTTTTTTTG TCAGCATTCT CACCTCGATT TTCAGCGTCG TATCCATATA CTCGGTACTT 
CCGCTGCTCA ATGAGATATT CACTGCCGAT AAACCTGTCG TTCATGTTCA GTCAGGTTCG 
ATTTCGCAAC ATGAAAAACC TGATGGGCTG ACGGAGAAGA CTTCAGTCGT TTCCAGAGAA 
AGTCTTGTCG ATACGGAGGC TCTTCAGCAG CGGGCAAAAG ATGTTATGGC GCGTTTGTTC 
CATGCGGATA CAAAGCAGCA GACATTGCTC AATATCTGTC TTTTTCTCAT AGCTGCTTTT 
GCCTTCAAGA ACTTTTTCCT TTATCTCAAC AAGCAGATAA TTTTCAGGAT ACAGACCAAG 
GCAACCAAGC AGCTTAGGGA CGATGTCTTC CGCTCGATCA TCGAGATGCA TCTCGACTAT 
TTCAACAACC AGCGGGTCGG AAGTCTCATG AACAATGTTT ATGGCGATGT TCAGACCGTA 
CAGACATCAA TCAGCTCGAC ATTCATCAAC CTCATACAGA ATCCTTTTAC CATATTCGTC 
TATCTCGGTG TTCTGCTTGT ACTGAGCTGG AAGCTGACCC TGTTTGCTCT TGTCGTTTCG 
GGGATCGTCT TTATTATCAT CAGGGTGATA GGCCGGAGGG TAAGAACGCT ATCGAGAATT 
TTCCGTAAAC GCATGGGGGA TATGAACTCA GTTCTCCAGG AACGGTTCAA TGGCATCAAG 
GTCATCAAGT CAAGCGGTTT CGAGGATGTT GAGACCGAGC GCTTCAAGGT TTTTACGAGC 
GATTTCCGCC GGCTCGACCT CAAAATATTC CGTCTTAAGA ATATTATCGG GCCGCTCAAC 
GAAACGCTGC TTGTTTTCGC TGTCGCCATG GTGCTCTGGT TCGGCGGATT GCAGGTATTC 
GACGGACGCA TGACTGCCAA TGAGTTGATT GTATTCGCTT TCAGCCTCTA CTCTGCCATG 
GGCCCTCTCA AGACGCTTGG GGAGGCCAAT ACCAACATCC AGAACGGTAT GGCTTCTGCC 
GAAAGGTTGT TCGAGGTTAT CGATGCCGAA CCGATCGTTA TAAACGGAAC CCGATCCATC 
AGCGTATTTT CCGGCAGTAT CAGGTTTGAG GATGTCTGTT TTAAATACCG CAAAGAGCCG 
GAAGCCCCAA ATATTCTCGA TCATGTAACC TTTGAAATCC GGATGGGTGA AATGGTCGCA 
CTTGTCGGGC AGTCAGGTTC CGGCAAATCC ACAGCGGTTG ATCTGCTGCT GCGTTTCTAT 
GACGTCGATT CAGGGCGTAT TACCATTGAC GGCATAGATA TCAGGGAGTT CGATTACAAG 
CAGCTCCGTC GCATGATCGG CGTAGTGAGC CAGGAAGTCA TTCTCTTCAA CGATACCATA 
GGGCAGAACA TCGCATACGG CGTGCATCAA GAGGTCGCTC CCGAACAGGT CGAGGCAGCA 
GCCAGGCTTG CCAATGCTCA CGCCTTCATT ATTGAAAAAC CGCTTCAGTA CGATACCGTT 
ATCGGCGACC GCGGCATCCA GCTTTCAGGG GGGCAGCGTC AGCGTATCGC TATAGCCAGG 
GCTATGGTGA AAAATCCCTA CCTTCTCATT TTCGATGAGG CAACAAGTGC CCTGGACAAT 
GAATCGGAAA AAGTGGTACA GGAAGCGATC AATAACGCCT TACAGAACAG GACTGCGCTT 
GTTGTCGCTC ATCGGCTTTC TACCATCAGA AATGCCGATC GGATTATTGT ATTTGACAAA 
GGTCGGGTAG CAGAAACAGG AACTCACGAT GAGCTGTTGG CCGGAAATGG GTTGTACAAG 
ATTTATTACG ATATCCAGTT TGGGGAGAAA AATGACAGGG TTTGA 

 

Protein sequence

MKLIFRVLAY LSPSKGKVLL VFFVSILTSI FSVVSIYSVL PLLNEIFTAD KPVVHVQSGS 
ISQHEKPDGL TEKTSVVSRE SLVDTEALQQ RAKDVMARLF HADTKQQTLL NICLFLIAAF 
AFKNFFLYLN KQIIFRIQTK ATKQLRDDVF RSIIEMHLDY FNNQRVGSLM NNVYGDVQTV 
QTSISSTFIN LIQNPFTIFV YLGVLLVLSW KLTLFALVVS GIVFIIIRVI GRRVRTLSRI 
FRKRMGDMNS VLQERFNGIK VIKSSGFEDV ETERFKVFTS DFRRLDLKIF RLKNIIGPLN 
ETLLVFAVAM VLWFGGLQVF DGRMTANELI VFAFSLYSAM GPLKTLGEAN TNIQNGMASA 
ERLFEVIDAE PIVINGTRSI SVFSGSIRFE DVCFKYRKEP EAPNILDHVT FEIRMGEMVA 
LVGQSGSGKS TAVDLLLRFY DVDSGRITID GIDIREFDYK QLRRMIGVVS QEVILFNDTI 
GQNIAYGVHQ EVAPEQVEAA ARLANAHAFI IEKPLQYDTV IGDRGIQLSG GQRQRIAIAR 
AMVKNPYLLI FDEATSALDN ESEKVVQEAI NNALQNRTAL VVAHRLSTIR NADRIIVFDK 
GRVAETGTHD ELLAGNGLYK IYYDIQFGEK NDRV