| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_0256 |
|---|
| Symbol | |
|---|
| ID | 6354713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | - |
|---|
| Start bp | 288452 |
|---|
| End bp | 289825 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642667885 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_001942330 |
|---|
| Protein GI | 189345801 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1350] Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) |
|---|
| TIGRFAM ID | [TIGR01415] pyridoxal-phosphate dependent TrpB-like enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCAG ATCTCACCAA GGTCATCCTC GAGGAACACG AATTGCCAAG GCAGTGGTAC
AACATCCAGG CGGATCTTCC TTCGCCCATG CCTCCGCCTC TCGGCATGAA CGGCCTGCCG
ATTTCACCTG ATGATCTTGC AAAGGTTTTT CCGATGAACC TGATCGAGCA GGAAATGAGC
ACCGAACGAT GGATCGACAT CCCCGAAGAG GTGCTCGGCA TTCTGAAGCT CTGGCGTCCC
TCACCGCTTT ACCGGGCAAA ACGGCTTGAG AAAGCCCTTG GCACTCCGGC AAAAATCTAC
TACAAAAATG AAGGGGTATC GCCTGCCGGA AGCCACAAAC CGAACACCGC GGTAGCTCAG
GCATGGTACA ACCGGGAATT CGGCATCAAA TACCTTACAA CGGAAACAGG AGCGGGCCAG
TGGGGAAGCG CCCTTGCCAT GAGCTGCAAG CTGATCGGCA TCGAGTGCAA GGTGTTCATG
GTGCGCATCA GTTTCGACCA GAAGCCGTTC CGGAAGATCA TGATGAAAAC ATGGGGAGCC
GAATGCATTG CCAGCCCGAG TACCCAGACC GCAGCAGGAC GCGCCATTCT CGAGGAAATG
CCCGACACTC CCGGAAGCCT CGGTATCGCC ATCAGTGAAG CCATCGAGCA GGCTGTCGAA
CGGGATGATA CCCGCTATGC GCTCGGCAGC GTTCTGAACC ATGTGATGCT GCACCAGACC
ATCATCGGTC TTGAAGCGAA AAAGCAGTTC GATAAAATCG GCCTCTACCC GGATGTGGTG
ATCGGCTGTG CCGGAGGCGG ATCAAATTTT GCCGGTATCA GCTTTCCCTT CATCTGCGAT
AAAATACACG GCAAAGAGGT GCAGGTAATC GCTACCGAGC CGGAAGCGTG CCCCACGCTG
ACCAGAGGCC CCTATGTTTA CGATACCGGC GATGTTGCCA AAATGACTCC GCTGCTGCCC
ATGCACAGCC TTGGGCACCG CTTTATACCT CCGGCAATTC ACGCAGGCGG ACTTCGTTAC
CACGGCATGG CTCCTCTGGT AAGTCATGTC AAACAGCTGG GACTCATCGA GGCTACGGCC
CTGCCCCAGA GCGAGTGCTA CGAAGCCGCA CTGCTTTTTG CCCATACCGA AGGGTTCATT
CCGGCTCCTG AAACCTCGCA TGCCATTGCC CAGACCATCC GTGAAGCGAA AAAAGCGAAG
GAGGAGGGAA AGGAGAAGGT GATTCTCATG AACTGGTCAG GACACGGACT GATGGATCTG
CAGGGTTACG ACGCTTTTCT GTCGGGAAAA CTCTCCGATT ACGCGCTTCC GGAGGAACTG
CTTGAACAGT CGCTGGCTTC CATCAAAGAT CATCCTCTGC CCCCGCAACG ATGA
|
|---|
| Protein sequence | MSADLTKVIL EEHELPRQWY NIQADLPSPM PPPLGMNGLP ISPDDLAKVF PMNLIEQEMS
TERWIDIPEE VLGILKLWRP SPLYRAKRLE KALGTPAKIY YKNEGVSPAG SHKPNTAVAQ
AWYNREFGIK YLTTETGAGQ WGSALAMSCK LIGIECKVFM VRISFDQKPF RKIMMKTWGA
ECIASPSTQT AAGRAILEEM PDTPGSLGIA ISEAIEQAVE RDDTRYALGS VLNHVMLHQT
IIGLEAKKQF DKIGLYPDVV IGCAGGGSNF AGISFPFICD KIHGKEVQVI ATEPEACPTL
TRGPYVYDTG DVAKMTPLLP MHSLGHRFIP PAIHAGGLRY HGMAPLVSHV KQLGLIEATA
LPQSECYEAA LLFAHTEGFI PAPETSHAIA QTIREAKKAK EEGKEKVILM NWSGHGLMDL
QGYDAFLSGK LSDYALPEEL LEQSLASIKD HPLPPQR
|
|---|
| |