Gene Clim_0072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_0072 
Symbol 
ID6355595 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand
Start bp76218 
End bp78302 
Gene Length2085 bp 
Protein Length694 aa 
Translation table11 
GC content59% 
IMG OID642667695 
Producttranscriptional regulator, NifA subfamily, Fis Family 
Protein accessionYP_001942157 
Protein GI189345628 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones46 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATGAAG CCAGCACGCT CATGCAGTAT ATCAGCGATG CGGTGGGTTC CATACGCGAT 
CCGCAGGAGC TGTTCCGGAC GGTGACCGAC AAGCTGCGCC TGGTTTTCGA ATTCGATTCG
GCGGTTATCA TCACCTTCGA CCGCGACAGG CGCTACATCA ATGTTTTTTT CGAAATGCTT
CGTTTCGAGC TTCCCGATTC CGTTCGGCGT AAAAAACGGC CTATAGCGGG TTCGTGGATC
GAACCGCATC TCGGCGATAC CACCGTGTCG GTGCTCTCCA TAGAGGGCGA ACTCAACCGT
TATCCTTCTG ATTTCCCTGT TCCTGGCATG CTTTACGATC TTGGCATGCG GCAGGTGGTG
CTCTCGCCTC TGCGTTCCGG CGGCAAGGTG ATCGGTTTTC TGAATTTTGT TTCGAAGCGG
GAAAAGATAT GGTCGGAAGG CGAAAAGGAG CTGCTCACCA CCCTTTCGGC GCCTATCGCC
GTCGCGGTCA GCAATGCCCT TGCCTATGAG GAACTGCGTC AGAGCGAAGC CCAGATATCC
ATGCAGCTTG CCGTGAACAA CGCGCTGCTT ACCATACGGG ATCGCAGCCG TATGATGCTT
GCCGTCTGCG AGCAGATCGA CCGGCTGGTA CCCTGCACGT TTCTCGGCAT ACGGGTAATG
CAGAGCGACG GCGATTACCG GGTGTTCGAT AATTTCATGA GGGAACCCTC AGGATCGTTT
GCCCCTGTCC TCTCCTACGA TCATTTCGGC ATATCGGATT TCAGGGAGAT CGCCAAAGAG
AGTTTTGCGC TTATCTCCAA TCCCGGTTGC TATTCCGGAG CGGATTTCGA GCGGCTCTGC
CGGCAGTATC GGCTTGTTGC TCTGGTGCGT GAAAAACTCG GCGTCTGTTC GGTTATCAGC
GCCAGCCTGT GGGACTCCCC CGGCAGCCGC GCCGGACTGA TCATTTCGGA TACCAGGAGG
TCTTTCGACG AGCATGACCT GCAGACGGTG AGCCTCGTTG TGCCGCAGCT CTCGCTTGCG
CTGCAGAACT TTCTTGCCTA TGAGGATATC GACGAGCTTC GCGGGCGACT GGAGGGCGAG
CGGACATGGC TGATCGAGGA AATCAAGGGG GCGCATGCTT TCGAGGAGAT TATCGGCAGC
AGCGCCGCGC TTGCGGCCGC CCTGCGAAGG GTGAGCCAGG TTGCGCCGAC CGACGCGACC
GTACTGATCC AGGGGGAAAC CGGTACAGGC AAGGAGCTGT TCGCACGGGC CATCCACAAT
CTTTCTTCAC GCCGGGAGAA AGTGATGGTG AAGGTGAACT GCGCAGCGCT TCCGGCAGCG
CTGATAGAGT CGGAGCTGTT CGGACATGAA AAGGGCAGTT TCACCGGAGC GACGGAGCGC
AGGATCGGCA AGTTCGAGCT TGCCGCCGGA GGGACGATTT TTCTCGACGA GATCGGCGAG
CTGCCGCTGG AGCTTCAGGC CAAGCTGCTT CGCGTGCTGC AGGAGAGAGA ACTGGAGCGG
CTCGGCGGAA GCCGGGTCAT TCAGGTGGAT GTGCGCGTGA TTGCCGCTAC GAACCGCGAT
CTCGATGCGG AGGTCGCCGC CGGCCGGTTC CGCGAAGACC TTTATTTCAG GCTCAACGTG
TTTCCTCTCG CCGTTCCTCC CCTGCGGGAG AGGCGGGACG ATATTGCCCT GCTTGCCGCC
CACTTCGCTG CACGTTACGC CCGCGAATTC GGACGGCAGA CTCTGCCGTT CCGGCAGAGC
GATCTCCTGC GGCTCGAAGG GCGCGAGTGG AAAGGCAACA TCCGCGAACT GGCCCACCTG
ATCGAGCAGG TGGTGATCGT TTCCGAAGGG CCATCGCTCG ACTTCTCCTC CATCCTTTCG
CCCGAAACTT CCGCTGCCGG GAACCGGACG ACGGAAAGGG TAAAGAGCAT GCGCGATTTC
GAGTCGGAGA TGCTCATGCT CGAGCGGGAG CTGATACTCG ATGCGCTCGA ACGGTCGGGA
GGTCGGGTCA GCGGCGAGGG CGGAGCAGCG GAACGGCTCG ACATGCATCC GAAGACTCTC
TACTCCCGCA TCGACAAGCT GGGGTTGAGG AAGAGGTATG GGTAA
 
Protein sequence
MHEASTLMQY ISDAVGSIRD PQELFRTVTD KLRLVFEFDS AVIITFDRDR RYINVFFEML 
RFELPDSVRR KKRPIAGSWI EPHLGDTTVS VLSIEGELNR YPSDFPVPGM LYDLGMRQVV
LSPLRSGGKV IGFLNFVSKR EKIWSEGEKE LLTTLSAPIA VAVSNALAYE ELRQSEAQIS
MQLAVNNALL TIRDRSRMML AVCEQIDRLV PCTFLGIRVM QSDGDYRVFD NFMREPSGSF
APVLSYDHFG ISDFREIAKE SFALISNPGC YSGADFERLC RQYRLVALVR EKLGVCSVIS
ASLWDSPGSR AGLIISDTRR SFDEHDLQTV SLVVPQLSLA LQNFLAYEDI DELRGRLEGE
RTWLIEEIKG AHAFEEIIGS SAALAAALRR VSQVAPTDAT VLIQGETGTG KELFARAIHN
LSSRREKVMV KVNCAALPAA LIESELFGHE KGSFTGATER RIGKFELAAG GTIFLDEIGE
LPLELQAKLL RVLQERELER LGGSRVIQVD VRVIAATNRD LDAEVAAGRF REDLYFRLNV
FPLAVPPLRE RRDDIALLAA HFAARYAREF GRQTLPFRQS DLLRLEGREW KGNIRELAHL
IEQVVIVSEG PSLDFSSILS PETSAAGNRT TERVKSMRDF ESEMLMLERE LILDALERSG
GRVSGEGGAA ERLDMHPKTL YSRIDKLGLR KRYG