| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1602 |
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| Symbol | |
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| ID | 6332183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | - |
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| Start bp | 1655585 |
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| End bp | 1657501 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 26% |
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| IMG OID | 642657877 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001931754 |
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| Protein GI | 188997503 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00000652876 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTTA TAAGAGTATT TTTTAGAGAA ATCCAAAGAT ACTCTGTTTT ATTATTATTT
GTTATATTTT CTATTCTTTC TTTTTTACTT GTCTTTATTT CTTTACCTTT AATTGAAAAT
ATAACCTACA AGTATATTAT AAAAAAGGAC CTTGAAAAAG AAGATCAAAT TTCAGCCAAT
ATAATTAAAA AGCTAACGAA TTATCAAGAA GACATAAGTC TAATAGAAAA AATTTCTACT
AATAAAACTT TTTTTAAAAT TGCATCAGAT ATGTTGGAAG TTTTACTTAC AGAAAATACA
AGTTATGTAT ATGCTATATA TTTTAATAAT GGAAAATCCT TTATACTCAT AGATGTCTCC
AAAAAAGACC GAATGAAAAC CAACGATTTA TTTGAATTTC TGCAAGAGGA AACTCCGGTA
ATTAAAAAAG CGTTAGAAAG TGGACAATAT CAATATTTAA TTCATACTTC TGTAAAAACA
ATAGGTCTTA CATTTTATAA ACCTTTTAAA GACAAGAAGA ACATAGATTA TTTGCTTGTT
ATAGATTACA GCATAGAGAA AATATCCTAC ATATCTCAAT TGATAAGCGT CTTAAAAACT
TTCATTCTTT TATTTATATT TGCTGGCCTT GTTATAATAA ACGTAATTAT ATTTTTAGCT
TTAAAAGCGT CATATTATAA ACAAAGAAGT TTTACCGATA ATCTAACAGG TTTATACAAC
AGAAATTATT TACAACACAT AATGGATTTT AAATATATTA TTGCTTTGAT AGACATCGAT
TATTTCAAAA AAATTAATGA TACTTACGGG CATGCCATAG GTGATAAAGT TCTAAAAAGC
GTTGCAAACA CCATGAAGAA ACTAACAAGA GAAGAGGATA TTTTTATAAG ATATGGCGGT
GAAGAATTTT TATTATTAGC AAAAGTAGAC AGAAAACAAG ATATTCAAGT CATGTTAAAT
CTTTTTGAAA GAATAAGGTC TAATATTGAA AAATTAAAAA TTCCTATAAC TGATGGAGAT
TATATAAAGA CAACAATTTC TATCGGTGTT TATTTAAATA CAAATAAAGA TAAAAATATA
AATGAAGCTA TTAAGAAAGC TGACGTTGCT TTATATAAAG CAAAATCTAA AGGCAGAAAT
AGAATAGAAA TCTACGATGA AGAAAAGGAA GCTGAGAAAA AACTTATAAC TGTAGTTGAA
GTAAAAGATG CAATAGAAGA AAACCGTCTT TTATGTTATT ATCAACCAAT AGTAGACCTA
AAAGTTAACA ACATATCTCA CTACGAAGCT CTTGTAAGAA TTATAGATAA AAATGGCAAC
GTTGTACCAC CATTCAATTT CTTAAATGTA ATAGAAAATA CATTCATCTA TACAAAGCTA
ACAAAAGCTG TAATTGATTA TAACTATAAT ATTTTGAAAA AACATAAAAA CCTTAAAGTT
AGTATCAATC TAAAACAGGC GGATGTATTA AATAGGTCAA TAGTAGATTA TCTCTTATCA
ATATCGAAAG AGAAAGACAT AACAGAAAGA ATGCTTATAG AGATTGTCGA AACAGAAGAC
CTGTTAGCTT ATGAGGAATC TTTAGAAATA ATAAAGCAGC TTAAAGAAGC AGGATATTCA
ATATGCTTAG ATGATTTTGG CTCTGGATAC TCTAACTTCG TGTATCTATT GAGATTAAAC
GTTGATTATT TAAAGATTGA TGCGAATCTG ATAAAAAATA TAGTAAATGA TGATGTATCT
TACGAAGTAG TTAGAATGAT AGCTCAGTTT TGTAAAAAGA TGAAGATTAA AACAATTGCA
GAATATGTTG AAAATGAAGA AATTTTGGGA ATAATAAAAG AACTTGACAT TGATTATGGT
CAAGGATATC TATTCTCAAA ACCAAAGCCA ATAGAAGAGA TAATAGATAA TGAGTAA
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| Protein sequence | MNFIRVFFRE IQRYSVLLLF VIFSILSFLL VFISLPLIEN ITYKYIIKKD LEKEDQISAN
IIKKLTNYQE DISLIEKIST NKTFFKIASD MLEVLLTENT SYVYAIYFNN GKSFILIDVS
KKDRMKTNDL FEFLQEETPV IKKALESGQY QYLIHTSVKT IGLTFYKPFK DKKNIDYLLV
IDYSIEKISY ISQLISVLKT FILLFIFAGL VIINVIIFLA LKASYYKQRS FTDNLTGLYN
RNYLQHIMDF KYIIALIDID YFKKINDTYG HAIGDKVLKS VANTMKKLTR EEDIFIRYGG
EEFLLLAKVD RKQDIQVMLN LFERIRSNIE KLKIPITDGD YIKTTISIGV YLNTNKDKNI
NEAIKKADVA LYKAKSKGRN RIEIYDEEKE AEKKLITVVE VKDAIEENRL LCYYQPIVDL
KVNNISHYEA LVRIIDKNGN VVPPFNFLNV IENTFIYTKL TKAVIDYNYN ILKKHKNLKV
SINLKQADVL NRSIVDYLLS ISKEKDITER MLIEIVETED LLAYEESLEI IKQLKEAGYS
ICLDDFGSGY SNFVYLLRLN VDYLKIDANL IKNIVNDDVS YEVVRMIAQF CKKMKIKTIA
EYVENEEILG IIKELDIDYG QGYLFSKPKP IEEIIDNE
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