| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1560 |
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| Symbol | |
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| ID | 6331155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | + |
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| Start bp | 1606457 |
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| End bp | 1608859 |
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| Gene Length | 2403 bp |
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| Protein Length | 800 aa |
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| Translation table | 11 |
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| GC content | 26% |
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| IMG OID | 642657835 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001931712 |
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| Protein GI | 188997461 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0426061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGAAAGAG TTCTAAAGGT AAGGTCTTTT GCTAATAAGA TTATTCTGCT TTTTATTTTA
ATATTTTTTA TTTCTTCAAT CTTTGCTTTA TTTTTAGTCT CTTATTATGT ATATGACAGT
GAACTTGGAA AGGCAAAAAA AGGAATCGAA TTGGCTATTA AAATTAGAAA GGAGTCAAGT
CAGCAAATAT TAGATATGTA TTCTAAATCA TTACCTAACA TGATTAACGA ATCAATGGAT
AATGATTATT TGTTATACAT AACTGATAAA ATTCCTGATT TTCTAAAAAA CAACTACAAG
TATTATTTAA AGGACAAAGT AATATACTTT AAATTTAAGA AAGATGGTAA AAAATACGCT
GCAGCTGTAG ATGAAAAACT TTTAAACAGT CAAATTATGT CTAAGTATGG TATAGTTTCA
ATTTATAATC CAAATTTCTT CTTAGCTACG GATACCAATC TTAATTTAAA CAATATTTGT
GCTTACTCTA AATATGAAAA TTCAAATTTT TATTTAGCTG GTTGTATTAA AAAGGAAACC
ATTCTAAAAA TGGCTTTTAC TGAAGGTTTT AAAATAGTTA TTATTAGCGG CGGGTCATTT
TTATTTTTTG TTTTACTATT TTATTTTATA GCAAGAAGAT TAATTTTATT TCCATTGAAT
TACATCAAAT ACAAGCTTAA TGAGCTTGAA AAGAAAGATA TTAGATATGT AAAGTTTTAT
TTACACAAGT TTGGTTCAGA TGAACTTGCC AAAATTTCAG AAAAATTTGA AGAATTTAGA
ATTAGATTAA TAAAATCTCA AGACAAAATT TACCTTGTAT TTCATACAGT AACCAAAATA
TTATCAGCAA CAAATGAATT CAATAAATTT TCTAAATTTG TCTTAAATAA TTTAGATAAA
ATTTTAAATC TAAAAGGAAG TTATTTGATT TATCAATATA ATTCAGAAGA AGTTAAATCT
TTTTCTGACA AGTATTTACA AGATCAAAAA AATAGTCTTG AACTTGGAAA TTTTAATGAG
ATTATCTTAA AAAGAGATAT AGATAGTGAT TCATATATTG AATTTCATGG GTTTAGAAAA
GATAAACTGA ATGAAGAAGA TTTAGAATAC CTTGAAATAA TCTTATCAAA CCTTATCTAT
GTAATAAAAC TTTACAGAAC TGCAAACTAT GACTTTCTTA CAAGAGTTTT TAATAGAAGA
AAGATGATGG AACTTATCCA AAAGAATATA GAAAATTCTA AAAAATTCGC TATACTGATG
CTTGATATGG ATGATTTTAA AAGGATTAAT GACACGTTTG GTCATGACCT TGGAGACGAA
ATTTTAAAAG AAATTGTTAA AATTTTAAAA AATATAAGAA GACAGCAGGA TATTATAGGT
AGGTATGGAG GAGAGGAGTT TATTATCCTA AGTCCAGATG CCGATGGTAA AGAAGCATTA
AATATAGCAG AAGATATTAG AAAAGCCATT TCAGAAAAGC CGGTAGTAGT AAGAGATAAT
AAAATTTATA TATCTGTCAG CATAGGTATA GCTGAGTTTC CAATTCATGG AAATAGTCCA
AGTGAACTTT TAAAAGCTGC CGATATTGCT CTTTATAAAG CAAAAAAAGA AGGCAAAAAT
AAAGCTGTTT ATTTAATACC CGAAGAAGTA AAAAAAATTA TTAGTTTAGA GTTTGAATTT
AAAGATGCAA TATTAGATGC TATAAAAAAT GACAGATTTG TTCCATTTTT CCAGCCTATA
GTTGAAGCAA AAACTGGAAA TATATATGGT TATGAAGTTT TAGCGAGAAT TTACGATGAG
AAAGAAAATA AATACATTCC AGCATATCAA TTTATAAATA ATGCTATTAA GTACGGACTT
GTTGAAGAGA TAGATAAAAT AATTCAAGAA AAAGCAATTA AGTATTTTTC AGAAAAGAAA
TTGAATAAAT GCTTATTCTT AAATATGTCC AAAAATTTTA TTTATAAAAG TGGAAACTTA
GAAAATCTAT ATAACCTTTG CGTATCAAAT GGTTTAAAAC CTGAAAATGT TTATTTAGAG
ATAACAGAAG AAGAAGCTAT TTTAGATTTT AAAAATGTAA AAGAATTAAT CCAGTACGGA
AAATCCTTAG GATTTAGATA CGCAATAGAT GATTTTGGTG CCGGATATTC TAATTTTGTA
TATCTAAAAC ATTTTAATGT TGATATAATC AAAATAGATG GTTCATTGGT TGCAAATATT
CATCAAGATT TAGACAACCA AATTATAGTT GAAAATATTA TAAGAATTGC CAAACATAAA
AATATTAAAG TGTTGGCAGA AATGGTTGAA TTAGAGGAAG AGAAAGATAT TCTTATAAAA
CTTGGGGTAG ATTATTTGCA AGGATATCTA TTTGGAAAAC CAGAAAAAGA AGTTAAGGAG
TAA
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| Protein sequence | MERVLKVRSF ANKIILLFIL IFFISSIFAL FLVSYYVYDS ELGKAKKGIE LAIKIRKESS
QQILDMYSKS LPNMINESMD NDYLLYITDK IPDFLKNNYK YYLKDKVIYF KFKKDGKKYA
AAVDEKLLNS QIMSKYGIVS IYNPNFFLAT DTNLNLNNIC AYSKYENSNF YLAGCIKKET
ILKMAFTEGF KIVIISGGSF LFFVLLFYFI ARRLILFPLN YIKYKLNELE KKDIRYVKFY
LHKFGSDELA KISEKFEEFR IRLIKSQDKI YLVFHTVTKI LSATNEFNKF SKFVLNNLDK
ILNLKGSYLI YQYNSEEVKS FSDKYLQDQK NSLELGNFNE IILKRDIDSD SYIEFHGFRK
DKLNEEDLEY LEIILSNLIY VIKLYRTANY DFLTRVFNRR KMMELIQKNI ENSKKFAILM
LDMDDFKRIN DTFGHDLGDE ILKEIVKILK NIRRQQDIIG RYGGEEFIIL SPDADGKEAL
NIAEDIRKAI SEKPVVVRDN KIYISVSIGI AEFPIHGNSP SELLKAADIA LYKAKKEGKN
KAVYLIPEEV KKIISLEFEF KDAILDAIKN DRFVPFFQPI VEAKTGNIYG YEVLARIYDE
KENKYIPAYQ FINNAIKYGL VEEIDKIIQE KAIKYFSEKK LNKCLFLNMS KNFIYKSGNL
ENLYNLCVSN GLKPENVYLE ITEEEAILDF KNVKELIQYG KSLGFRYAID DFGAGYSNFV
YLKHFNVDII KIDGSLVANI HQDLDNQIIV ENIIRIAKHK NIKVLAEMVE LEEEKDILIK
LGVDYLQGYL FGKPEKEVKE
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