Gene SYO3AOP1_1389 details

Gene Information

• Locus tag: SYO3AOP1_1389
• ID: 6331202
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sulfurihydrogenibium sp. YO3AOP1
• Kingdom: Bacteria
• Replicon accession: NC_010730
• Strand: +
• Start bp: 1430713
• End bp: 1431279
• Gene Length: 567 bp
• Protein Length: 188 aa
• Translation table: 11
• GC content: 32%
• IMG OID: 642657671
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: YP_001931550
• Protein GI: 188997299
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.000175424
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCATTTG AAATAATTGA CACTGAAATT CCCGAGGTAA AAATAGTCAA GTCAAAAGTT 
TTTGAAGATG CGCGGGGATT TTTCTTAGAA TTTTATAAAA AATCTGACTT TGAAAAAGCC 
GGATTAAATG TTGAATTTGT TCAAGATAAT CATTCTAAGT CTGTTAAAGG CGTGCTCAGA 
GGACTTCATT TTCAAGAAAA ACCTTACGAG CAAGGTAAAT TGGTAAGATG CATAAAAGGA 
AAAATTTTTG ATGTGGCAGT AGATATAAGA CCGGATAGTC CATACTTTAA AAAATGGGTA 
GCCGTTGAAT TATCTGAAGA AAATAAGCTT ATGCTATGGA TTCCGCCAGG ATTTGCTCAT 
GGATTTTTAA CCTTATCAGA AGAAGCAGAG ATAATTTATA AAGTTTCCCA TAACGAGTAT 
TCTCCAGCTT ATGACAGAGG AATAATATGG AACGACCAAG ATATAAATAT AAAGTGGCCA 
TTAGAAACTA TTGATAATCT TATCTTATCA GAAAAAGATA AAAAACTTCC AACTTTAAAA 
GAATATATAA AGGAGATAAA AAGATGA 

 

Protein sequence

MPFEIIDTEI PEVKIVKSKV FEDARGFFLE FYKKSDFEKA GLNVEFVQDN HSKSVKGVLR 
GLHFQEKPYE QGKLVRCIKG KIFDVAVDIR PDSPYFKKWV AVELSEENKL MLWIPPGFAH 
GFLTLSEEAE IIYKVSHNEY SPAYDRGIIW NDQDINIKWP LETIDNLILS EKDKKLPTLK 
EYIKEIKR