| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1334 |
|---|
| Symbol | |
|---|
| ID | 6331532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | - |
|---|
| Start bp | 1371908 |
|---|
| End bp | 1374841 |
|---|
| Gene Length | 2934 bp |
|---|
| Protein Length | 977 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 642657617 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_001931496 |
|---|
| Protein GI | 188997245 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAAAG AGTATAACCA CCAAGAAATA GAAAATAAAT GGGCTGATAT ATACAAAAAT
TCTGAATATT TTAAAGCACA AACAGGCAAA AAACCTTATT TTTCTGTTGT GATGCCTCCG
CCAAACGTAA CCGGAAGCCT CCACATAGGA CATGCCTTGA ACGTGACTTT ACAAGATATA
ATGGTCAGAT ACAAAAGAAT GCAAGGATAC AATGTTTTAT GGCTTCCGGG ATTTGACCAT
GCCGGCATTG CAACTCAATG GGTGGTAGTA AGGGAGCTTC AAAAAGAAGG AATAAGTAGA
TTTGACCTTG GAAGAGAAAG ATTTATAGAA AAAGTCTGGC AGTGGGTTCC AAAATCAAGA
GATAGTATAA AAAATCAGCT TATAAGAATA GGTGCATCTT GTGATTGGTC AAGACAAAGA
TTTACCTTAG ATGAAGGATT TTCAAGAGCG GTTAGATATG CATTTGTAAA TCTTTATAAA
GAAGGTTTAA TCTTTAAAGC ACCTTACATA GTAAATTGGG ATCCAAAAGA GAAAACAGCA
ATATCAGACT TAGAAGTTGA GTACCAGGAG CATAAAGGCA AAATCTGGCA TATTAAATAT
CCACTGGAAG ATGGTTCTGG TTATATTGTA GTCGCAACAA CAAGACCGGA GACAATGCTT
GGAGATACAG CTGTAGCGGT CAATCCAAAC GATGAAAGAT ATAAAGATTT AATAGGTAAA
AGAGTAAGGT TACCACTTGC ACCTGAAAAA AGAATAGATA TAAATGGTAA TGAAGTCTCT
AATCTAATTC CAATAATTGC TGATGAGTAT GTAGACCCAG CCTTTGGTTC CGGAGCTGTA
AAAATCACTC CTGCCCATGA CCCAAATGAC TTTGAAGTCG GAAAAAGACA TAACCTTCCA
ATGGTCATTG TTATGGATGA ATCTGCACAC ATCAATGAAA ACGGCGGAGA GTTTAAAGGT
TTATACAGAT ACGAAGCACG TCAAAAAATT GTAGAAAAGT TAAAAGAACT TGGACTGTTA
GAAAAAGAAG AAGATCATAT TCATAATGTA GGACATTCTC AAAGGTCTAA GGAAATAGTA
GAGCCATACC TTTCAAATCA ATGGTTTGTA GATACTAAAA AACTTGCAGA TAAGGCTATT
AAAGTTGTAG AAGATGGTCA GATAAAATTT ATTCCGGAAG GATGGGTAAA AACTTATCTA
AACTGGATGT ATAACATAAG GGAATGGTGT ATATCTCGCC AAATCTGGTG GGGACACAGA
ATACCAATCT GGTATTGCAA AGACTGTAAT CATACAAACC CATTTAACGA TGACAGCTAT
ACTTCTTTAG AAGAAAAAAT AATATTTAAT CTTTATGCAG ATGGAAAAAT CGGACAAATT
TTCTGCGTAG ATGATGTTTT AAACATACTA AAAGACAAAA ACTTTACACA TCCGGAAAAA
ACAAATTTAG AATTTTATGA AAAAATAGTA TTTGGAGAAA AAACAAGTCA GTTTGAAAGT
AAAGATAGTT TAATTAAGTT ATTGGAAAAT TCAAATAAGT TTGAAAAAGT GTACAACGAA
AGATATAAAA TCAAGCTAAA ATGTGAAAAA TGCGGGTCTG AAAATCTTCA TCAAGAAGAG
GATGTGCTGG ATACTTGGTT TTCTTCTGCA TTATGGCCAT TTGGTACCCT TGGCTGGCCA
TCAAGAAAAG ATGATTTAGA AACATTCTAT CCAACATCCC TTTTAGTGAC AGGATTTGAC
ATCATATTCT TCTGGGTTGC AAGAATGATA ATGATGGGTA CTAAGTTTAC AAACGATGTT
CCATTTAAAG ATGTTTACAT TCATGCACTT GTTAGAGATG AAAAAGGCGA AAAAATGTCT
AAAACAAAGG GTAATGTGAT AGACCCGCTT GAAATGGCTG AAAAATACGG TTCAGACGCT
TTAAGATTTA CCTTAGCATC ATTGGCTGCA CAAGGTAGAG ATATAAGACT TTCTGAAAAG
AGAATAGAAG GATATAAGCA TTTCTCAAAC AAAATCTGGA ACGCATCTAA GTTTGTTTTA
ATTAACAGTG AAGATTACGA CGGAAAGACA AATTTAGAAA GTTTAAGCTT GTCAATAGAA
GACTACTGGA TTTTAACAAA ATTAAACAAA ACTATCGAAA GCTCTACAAA AGAGCTTGAG
AATTATAGAT ACAATGAGTA TGCAAATATT CTTTACGACT TTTTCTGGCA CGACTACTGC
GACTGGTATA TTGAACTTTC AAAAGAAAGA ATTTATAAAG GTAGCTCAGA AGAGAAAAAA
ACAGCTTTAA CAGTTTTAAA CTTTGTATTA AGAGAATCTT TAAAACTTCT TCATCCTATA
ATGCCATACA TAACAGAGGA AATATACAGC TACTTAAAAA ATAAAGACTC CGAAGTTTTA
GCAGTAGCAC CATATCCAAA AGTTTTAGAG AGTTTTAAAA ATGAAGAAAA TTATCAATTC
ATCGAAGACT TAAAAAATCT TATATCTTCT GTGAGAAATG TTAGAAGCGA CTTTTCAATA
GAGTCAACCA GAAAATTAAA CATCAAAATA AAAGCAAAAG ATTTATCAGT AAAAGAAAAA
CTAAAATGGC TACAAAATCA GATAAAAACA CTTATTAAAG CTGAAAGCTT AGAAGTTAGT
ACTGATATAG AAAAAACATC TACAGAAATA GCTGTTGTAA GCGACCTGGG GGAAGTCTTT
GTAGACCTTC AAGGTATCGT TGACATAGAA AAAGAGATAG AAAGGCAGAA AAAAGCTTTA
GCTGACATTG AAAAGTCTAT AAAAATAGCA GAAGGTAAGC TGTCTAATGA AAATTTTGTA
AACAAAGCAC CGTCGCAAGT TGTAGAAAAA GAAAGACAGT TATATCAAGA ATTGAAAGAA
AAAAGAGAAA AGATTTTAAA TCTTATAAAA ATGCTTGAAA GTAGTAGGGT TTAA
|
|---|
| Protein sequence | MLKEYNHQEI ENKWADIYKN SEYFKAQTGK KPYFSVVMPP PNVTGSLHIG HALNVTLQDI
MVRYKRMQGY NVLWLPGFDH AGIATQWVVV RELQKEGISR FDLGRERFIE KVWQWVPKSR
DSIKNQLIRI GASCDWSRQR FTLDEGFSRA VRYAFVNLYK EGLIFKAPYI VNWDPKEKTA
ISDLEVEYQE HKGKIWHIKY PLEDGSGYIV VATTRPETML GDTAVAVNPN DERYKDLIGK
RVRLPLAPEK RIDINGNEVS NLIPIIADEY VDPAFGSGAV KITPAHDPND FEVGKRHNLP
MVIVMDESAH INENGGEFKG LYRYEARQKI VEKLKELGLL EKEEDHIHNV GHSQRSKEIV
EPYLSNQWFV DTKKLADKAI KVVEDGQIKF IPEGWVKTYL NWMYNIREWC ISRQIWWGHR
IPIWYCKDCN HTNPFNDDSY TSLEEKIIFN LYADGKIGQI FCVDDVLNIL KDKNFTHPEK
TNLEFYEKIV FGEKTSQFES KDSLIKLLEN SNKFEKVYNE RYKIKLKCEK CGSENLHQEE
DVLDTWFSSA LWPFGTLGWP SRKDDLETFY PTSLLVTGFD IIFFWVARMI MMGTKFTNDV
PFKDVYIHAL VRDEKGEKMS KTKGNVIDPL EMAEKYGSDA LRFTLASLAA QGRDIRLSEK
RIEGYKHFSN KIWNASKFVL INSEDYDGKT NLESLSLSIE DYWILTKLNK TIESSTKELE
NYRYNEYANI LYDFFWHDYC DWYIELSKER IYKGSSEEKK TALTVLNFVL RESLKLLHPI
MPYITEEIYS YLKNKDSEVL AVAPYPKVLE SFKNEENYQF IEDLKNLISS VRNVRSDFSI
ESTRKLNIKI KAKDLSVKEK LKWLQNQIKT LIKAESLEVS TDIEKTSTEI AVVSDLGEVF
VDLQGIVDIE KEIERQKKAL ADIEKSIKIA EGKLSNENFV NKAPSQVVEK ERQLYQELKE
KREKILNLIK MLESSRV
|
|---|
| |