| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1303 |
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| Symbol | |
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| ID | 6331590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | + |
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| Start bp | 1339391 |
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| End bp | 1340230 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 642657587 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001931467 |
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| Protein GI | 188997216 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.00894856 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTTTAG ACGGAAATAC CTTAGTCTAT GGAATATTTG GTTATCCTGT AAAACATTCA
AAGTCTCCTA CGTTTCAAAC AGCAGCATTC CAACATCTTG GTATAAATGC TGTATATGTT
CCATTTCAAG TAAAACCGGA AGATATAGAA AAAGCGGTAG AATCTTTAAG AGTTTTAGAT
ATCAAAGGCG TCAATGTCAC AATCCCACAT AAAGAAAACG TAATTCCATA TCTTAATGAA
ATCTCAGAAG AAGTCAAAGT AATCAAAGCA GTTAACACGA TCAAAAATAT TGATGGATAT
CTTATTGGGT ACAATACAGA TTGGTATGGA TTTATTGAAG GTTTAAAAGA AATCATGCCG
GATATAGCCG GTAAACGAGT TTTAGTCATT GGTGCAGGTG GTTCTTCAAG GGCAATTATT
TATGGACTGT TAAATCAAGG AGCCGGAAAA ATTTATTTAG CCAACCGAAC TATCCAACGG
GCAGAGAATT TGATAGAAGA TTTTTCCAAC TTTTATAGAA TTGTTAAAAT GATTATAAAG
CCAATTAGTT TAGAGGAGAT AAACCGTATT TTGAACGAAG TTGAACTTAT AGTTAACACA
ACTTCCGTAG GTTTAAATGA AGATGACCCA GAAATTTTTG ATTATAATCT TATTAATTCA
AGCCATACAG TCGTGGATAT TATCTATAAA GAAACTAAAC TGCTACGAAA AGCAAAAGAA
AAAAATGCTA AATATCAAAA TGGATATCCT ATGTTAATCT ATCAAGGGGC AAAATCTTTT
GAAATTTGGA CTGGCAAACC AGCACCAATA GAAGTTATGA AAAAGGCTAT TAGGGTATAA
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| Protein sequence | MTLDGNTLVY GIFGYPVKHS KSPTFQTAAF QHLGINAVYV PFQVKPEDIE KAVESLRVLD
IKGVNVTIPH KENVIPYLNE ISEEVKVIKA VNTIKNIDGY LIGYNTDWYG FIEGLKEIMP
DIAGKRVLVI GAGGSSRAII YGLLNQGAGK IYLANRTIQR AENLIEDFSN FYRIVKMIIK
PISLEEINRI LNEVELIVNT TSVGLNEDDP EIFDYNLINS SHTVVDIIYK ETKLLRKAKE
KNAKYQNGYP MLIYQGAKSF EIWTGKPAPI EVMKKAIRV
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