| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1203 |
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| Symbol | |
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| ID | 6331459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | - |
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| Start bp | 1253540 |
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| End bp | 1254385 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 642657487 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD family |
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| Protein accession | YP_001931368 |
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| Protein GI | 188997117 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000000000512753 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAAC AAGATGAATT GACAACATTA CAATTATATA TGCAACAGAT GGGAAAGCAT
CCTATGCTTT CTCCTGAAGA AGAAAAAGAG CTTGCCATAA GAGCTAAACA AGGGGATAAA
GAAGCTTTAA AGAAACTTGT TGAAGGAAAT TTAAGATTTG TTGTGAGCAT AGCTAAAAAC
TTTATGGGTT GGGGTGTACC TTTAACTGAC TTAATAGCTG CAGGCAACTT AGGATTGATT
GAAGCTGCAA AAAGATTTGA CCCGGATAAA AATGTTAAAT TTATATCTTA CGCTGTTTGG
TGGATCAGGC AAGCAATAAT GCAAACAATA TTCCAACAAA CAGGAGCAGT TAGAATACCG
GTTAAAGAGT CATTATTTAT AGCAAAAGTT AAAGAAACTT ATGAAAAATT AAAAGAAGAG
CTTGGAAGAG AACCTACGGA AGAAGAAATC GCAAAAAGAT TAAATACGTC TGTTAAAAAA
GTAAAAAATG CACTATCAAT AGTTAGATTA CCAATTTCGC TTGATATGCC ACTTGGTGAA
GGTGGTGAAG AAGATTTTAC TTTATTAGAT GTTTTGTCTA AAAAAGGAAC AGAAGATATC
GAGAAAGAGT TGATAGAAGA GACAATTCAT AAAGAATTGG AAAGTATGTT AGATGTTTTA
GATGAAAGGG AAAAAGAAAT TATAAAAATG AGATACGGAT TAGATGGGGA AGAGCCAAAG
ACTTTGGAAG AAGTAGGAGA AAAGCTCGGA ATATCAAGAG AAAGAGTCAG ACAGTTAGAA
CAAAGAGCAT TAAAAAAGTT GAAAGCTGTC GCTTTAAAAA AGCATTTAAA AGATTTCTTA
TCATAA
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| Protein sequence | MAEQDELTTL QLYMQQMGKH PMLSPEEEKE LAIRAKQGDK EALKKLVEGN LRFVVSIAKN
FMGWGVPLTD LIAAGNLGLI EAAKRFDPDK NVKFISYAVW WIRQAIMQTI FQQTGAVRIP
VKESLFIAKV KETYEKLKEE LGREPTEEEI AKRLNTSVKK VKNALSIVRL PISLDMPLGE
GGEEDFTLLD VLSKKGTEDI EKELIEETIH KELESMLDVL DEREKEIIKM RYGLDGEEPK
TLEEVGEKLG ISRERVRQLE QRALKKLKAV ALKKHLKDFL S
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