Gene SYO3AOP1_1196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSYO3AOP1_1196 
Symbol 
ID6332566 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSulfurihydrogenibium sp. YO3AOP1 
KingdomBacteria 
Replicon accessionNC_010730 
Strand+ 
Start bp1245771 
End bp1246445 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content29% 
IMG OID642657480 
Productpolysaccharide deacetylase 
Protein accessionYP_001931361 
Protein GI188997110 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.822308 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATCT TTATGTATCA CAACATAGAC ATACCACCAA AAGAGGCTAA ATTAAAATCA 
TTATATGTTA AACCAAACAA ATTTGAAACA CAGTTAAAAG TCTTAAAAAA ATTTGGATAC 
AACTTTGTGA AAACAGAAGA CCTTGAAAAC TATCCAAAAA AATCTATTTT ACTAACATTT 
GATGATGGTT TTAAGGATTT TTACGATAAT GCTTTTCCAA TAATTAAAAA ATACAACGCT 
AATGCTATTG TTTTTGTCCC TGCTGGATTG GTAGACACTT TTAACCAATG GGATTACGAA 
AAGTTAAACG TAAGAAAAAA ATTAATGAAC TGGGAAGAGA TAAAAATAAT TCATAAAGAA 
GGCATTGAAA TAGGCTCTCA CACATTGACG CATCCATTTT TGACAAAAAT ACCAAAAGAA 
ATGGCAAAAA TAGAGATTCA AGACTCAAAG AAAATGTTAG AAGATATGCT ATCAACAGAG 
ATAACATGTT TTTGCTATCC ATACGGAGAC TATAACGAGA CTATTAGAGA TTTAGTTATA 
GAAGCAGGTT ATAAATATGC TTTTACAACA AAAGAAGGAA GTTTAGAACA AAGCGATAAT 
TTTTATGAGA TAAAACGAAT AATGATTTCA GGATTTTACT CATTGCCAAA GGTTCTATGG 
AAAACAATAA TATAA
 
Protein sequence
MKIFMYHNID IPPKEAKLKS LYVKPNKFET QLKVLKKFGY NFVKTEDLEN YPKKSILLTF 
DDGFKDFYDN AFPIIKKYNA NAIVFVPAGL VDTFNQWDYE KLNVRKKLMN WEEIKIIHKE 
GIEIGSHTLT HPFLTKIPKE MAKIEIQDSK KMLEDMLSTE ITCFCYPYGD YNETIRDLVI 
EAGYKYAFTT KEGSLEQSDN FYEIKRIMIS GFYSLPKVLW KTII