Gene SYO3AOP1_0980 details

Gene Information

• Locus tag: SYO3AOP1_0980
• Symbol: prfA
• ID: 6332775
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sulfurihydrogenibium sp. YO3AOP1
• Kingdom: Bacteria
• Replicon accession: NC_010730
• Strand: +
• Start bp: 1012797
• End bp: 1013879
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 642657269
• Product: peptide chain release factor 1
• Protein accession: YP_001931155
• Protein GI: 188996904
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0216] Protein chain release factor A
• TIGRFAM ID: [TIGR00019] peptide chain release factor 1

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0000000572262
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATAAAA AGTTTTTAGT CCAATTAGAA AGCATAGAAG AAAAAGTAAA AAAGCTTGAA 
GAGTTGATGG CTGATCCGGA AGTTTTAAAG GATCAGTCTA AAATTCAGTC TATAGCAAAA 
GAACACAAAG AACTATCAGA AATTTTAAAT CTTTATAATG AATATAAAAA AGTAAGTAGA 
CAAATAGAAG AAGTAAAACA ACTTCTAAAC TCTACTCCTG ATGATGATTT ACGCGAATTG 
GCAGAAGAAG AGTTAGAATC TTTAAAAAAA CAGCAGGAAG ATTTAGAGAA AAAAATAGAG 
ATAGCACTTC TACCAAAAGA CCCTAACGAT GAAAAAAACG TTATCTTAGA AATAAGACAA 
GGGGCAGGTG GAGACGAAGC ATCTTTATTT GCTGCTGAGC TTTTTAGAAT GTATCAAAGA 
TACGCTGAAA GACACGGCTG GAAAACAGAA ATTTTAAGCT TACATCCAAC AGAAAAAGGC 
GGTATAAAAG AAGTTATAGC CTTAATTAAA GGTAAAGGTG CATACTCAAG ATTAAAGTAT 
GAAAGCGGTG TTCATAGGGT TCAAAGGGTG CCAGAAACTG AATCTTCTGG TAGAATTCAT 
ACTTCGACTG TTACAGTGGC TGTTTTGCCA GAAGCTGAAG AGGTTGATAT AGAAATAAAA 
CCAGAAGAGT TGAAGATAGA GACTATGAGA GCTGGCGGAG CTGGTGGTCA ACATGTAAAC 
ACTACCGATT CAGCTGTTAG AATTACACAC ATTCCCACAG GAATGGTAGT TACATGCCAA 
GATGAAAGGT CTCAGCTTCA AAATAAAATG AAGGCTATGC AGATTTTAAG AGCAAGACTT 
AAAGATTATT ATGAAAGGCT TGAAAAAGAA AAGATTGCAA AGGAAAGAAA AGAACAGGTT 
GGAACCGGTG AAAGAAGTGA AAAGATAAGA ACTTACAACT TTCCACAAAA CAGAGTTACT 
GACCATAGAG TAAACTATAC TTCTTATAGA ATCAACGATA TTATGGATGG GGATTTAGAC 
GAAATTATAG ATGTGTTGAT CGCAAAAGAA AACGAAGAAA AATTAGCAAA TTTAGAAATT 
TAA 

 

Protein sequence

MDKKFLVQLE SIEEKVKKLE ELMADPEVLK DQSKIQSIAK EHKELSEILN LYNEYKKVSR 
QIEEVKQLLN STPDDDLREL AEEELESLKK QQEDLEKKIE IALLPKDPND EKNVILEIRQ 
GAGGDEASLF AAELFRMYQR YAERHGWKTE ILSLHPTEKG GIKEVIALIK GKGAYSRLKY 
ESGVHRVQRV PETESSGRIH TSTVTVAVLP EAEEVDIEIK PEELKIETMR AGGAGGQHVN 
TTDSAVRITH IPTGMVVTCQ DERSQLQNKM KAMQILRARL KDYYERLEKE KIAKERKEQV 
GTGERSEKIR TYNFPQNRVT DHRVNYTSYR INDIMDGDLD EIIDVLIAKE NEEKLANLEI