| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0811 |
|---|
| Symbol | |
|---|
| ID | 6331957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | + |
|---|
| Start bp | 850523 |
|---|
| End bp | 852514 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 642657107 |
|---|
| Product | excinuclease ABC subunit B |
|---|
| Protein accession | YP_001930998 |
|---|
| Protein GI | 188996747 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000000131315 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAA AAATATTCAA TCTAAAATCA AACTTTAAAC CTACCGGAGA CCAGCCAAAA
GCTATAAAAC AGCTTTATGA AAATCTTATT TCAGGTGTAA ACCAGCAGGT CTTGCTTGGT
GCAACAGGAA CAGGTAAGAC CTTTACCATA GCCAACCTTA TTGAAAAATA CGGAAGACCA
ACCTTGATAT TGTCCCATAA CAAAACTTTA GCAGCACAGC TTTACAGAGA AATAAAAGAG
CTGTTTCCTG ACAATGCCGT TGAATACTTT GTGTCTTATT ATGATTATTA CCAACCGGAA
GCCTACATTC CACAAAAAGA CCTATACATA GAAAAAGACA GTGCAATCAA TGATGCAATA
GACAGGCTAA GACATTCAGC AACAAGAAGT CTGATAGAAA GACCGGATAC GATTGTAGTA
GCTTCTGTAT CCTGCATATA CGGACTTGGA ACGCCAGAAT TTTATGAAAA GTTAAGATTA
CAACTTTACG TTGGAATGGA AATAGACAGA CAAACACTTT TGAGAAAATT GGTAGAACTT
CAATATCAAA GGGATGACTT TTCGTTAAAA AGAGGAACGT TTAAAGTAAA AGGTGATACA
GTTGAAATCT TGCCGGCATA CACAGAAGAC ATTATTGTAA GAGTTGAGTT TTTTGGCGAT
GAAATAGAAA GTATATCAGA AATAGATATT TTTAATAGAG ATGTAAAAAG AAAACTTGAT
AGAACTGTTA TCTTTCCGGC GAGCCACTAT GTTATACCAA GACCGGATAT GTTAGAGGCT
ATAAAACAGA TACAAAAAGA TTTAGAGATA GAAGTAGAAG AGTTTAGAAG AGCAGGAAAA
GAGATAGAAG CAAACAGGCT TTGGCAAAGG ACAAATTACG ATATAGAAAT GATGCTTGAA
CTTGGAACGT GTAAAGGGAT AGAAAACTAT TCAAGATACT TTGACGGCAG AAAGCCAGGA
GAACCACCTT ACACTCTTAT TGATTACTTT CCGGAAGATT TTTTACTTAT AGTAGATGAG
TCTCACGTTA CAATTCCACA GATAAAAGCA ATGTATAACG GAGACTTTTC AAGAAAAGAA
AACCTTGTTA AATATGGCTG GAGAATGAAA TCAGCCTACG ATAACAGACC TTTAAAATTT
GAAGAATTTG TGCAAAAAAT ACAAAAAGCG ATTTACGTAT CGGCAACACC GGCAGATTGG
GAAATCAAAA GGTCAAAAGG TGTAATAGTT GAGCAGATAA TCAGACCAAC AGGCTTGCTT
GACCCAGTAA TAGAAGTTAA AAAAACCGAA GGTCAAATAG ATGATTTAAT CAATGAAATA
TGGAAAGTCA AAGAAAGGGA TGAAAGAGTC ATTGTAATAA CGCTAACCAA AAAAATGGCA
GAACATTTAG CAGATTATCT GACAGAAAGA GAAATAAAGG CAATATACCT ACATTCAGAA
ATAGACACGA TAGAGAGGGT AAAGATAATA AAAGAATTTA GAGAGGGAAA GTATGATGTA
ATTGTTGGTG TAAACTTATT AAGAGAAGGT CTTGATATGC CGGAAGTATC TTTAGTTGCA
GTGCTTGATG CAGATAAGCA GGGATTTTTA AGGTCCAAGA CAGCATTAAT TCAAACTATC
GGAAGAGCAG CAAGAAACGT AAATGGAAAA GCTATTTTAT ACGCTGATAA ACTAACACCG
GCAATGATAG AGACAATAGA AGAGACAAAC AGAAGAAGAA AAATTCAAGA AGAGTACAAT
AAAAAACATG GAATAATTCC AAAAACTATA TCAAAAGAGG TAAAAGACTT AATCTCCTTA
GAAGAGCTTG GAATACTTGA AATATATAAC CAGCTACCGG ACGATATAAA CTCAGAAGAA
GATCTAATGA AAAAGATCGA GCAGCTTGAA AAACAGATGT GGGACTATGC TAAAAATTGG
GAGTTTGAAA AAGCAGCAGA AATTAGAGAC CAACTTGAAA AATTAAAAAA ATTAGCAACA
GTGATTGGAT GA
|
|---|
| Protein sequence | MSKKIFNLKS NFKPTGDQPK AIKQLYENLI SGVNQQVLLG ATGTGKTFTI ANLIEKYGRP
TLILSHNKTL AAQLYREIKE LFPDNAVEYF VSYYDYYQPE AYIPQKDLYI EKDSAINDAI
DRLRHSATRS LIERPDTIVV ASVSCIYGLG TPEFYEKLRL QLYVGMEIDR QTLLRKLVEL
QYQRDDFSLK RGTFKVKGDT VEILPAYTED IIVRVEFFGD EIESISEIDI FNRDVKRKLD
RTVIFPASHY VIPRPDMLEA IKQIQKDLEI EVEEFRRAGK EIEANRLWQR TNYDIEMMLE
LGTCKGIENY SRYFDGRKPG EPPYTLIDYF PEDFLLIVDE SHVTIPQIKA MYNGDFSRKE
NLVKYGWRMK SAYDNRPLKF EEFVQKIQKA IYVSATPADW EIKRSKGVIV EQIIRPTGLL
DPVIEVKKTE GQIDDLINEI WKVKERDERV IVITLTKKMA EHLADYLTER EIKAIYLHSE
IDTIERVKII KEFREGKYDV IVGVNLLREG LDMPEVSLVA VLDADKQGFL RSKTALIQTI
GRAARNVNGK AILYADKLTP AMIETIEETN RRRKIQEEYN KKHGIIPKTI SKEVKDLISL
EELGILEIYN QLPDDINSEE DLMKKIEQLE KQMWDYAKNW EFEKAAEIRD QLEKLKKLAT
VIG
|
|---|
| |