| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0767 |
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| Symbol | |
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| ID | 6331971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | - |
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| Start bp | 798954 |
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| End bp | 800981 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 642657057 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001930954 |
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| Protein GI | 188996703 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00000798179 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACATT ATACGAAGCA AGTAGATGCT GAAAATCGGA TTAGCTGTCT TCCTGTTGTT
GATGATAATA ATTTAATTGG TATTATCACA GAAAAAGATA TTGTTAAATA CATTTCAAAA
GGCATAACAG AAGACAAAAT TGGAGATTTG GCTTCAAAAC CTGTAATAAC AGTTTCATTC
AATGACACGC TGGACAATGT TTTAAAGTTG ATAAAAGAAA AAAATATAAG ACATTTGGTA
GTACTTAATG AAAACGATAA AATTGCAGGC ATCTTAACAC AGCGAGATAT ATTGAGGTCC
TTAGAATTTG ATTATACAAG ATTTCTTGAA AAAAAGCTAA GGTTTACAAA AGAAGCCTTA
GGATTATTCC CTGACCCAGT TATTGAACTA GTTGATACAG GTAATGAGCA GATTTTAATT
TGGGGAAATC AAAAAGCTGC CGAGATCTTT GGTAATCTTA ATTCAAAAAA CATAGAAGAT
ATAATACCAG AAAAAGAATG GTCTTATATT TTTTATAAAC TTAAAAAAGA AGGAAAAGTT
GAAGGTATTA AGTTTAATAC AGAAAATAAA TATTTTGAGC TTTCTGGCGT ATATTTTAAT
ATAGAAGAGA GAGATTATAA AGGCAGAATA AAAATAGTTC TAAAAGATAT AACGACAGAA
TATGAAAAGA GTGAGAAATT TAAGAAAGAA TTAGATATCT TAAAAAAAGT AATTAACTCT
ACGGAAGATA TGATGATTAT TTATCAGCCT ACCACTGGAA AGCTTAAACT TTGGAATAAC
GCAGTAAGAT TAAGATTAGG ATTCACTGAT GATGAACTTA AGAATAAAAC TATTTACGAT
ATTGTGGAAA TAGATAGGAA TATTCTTAAT GAAAATATTC AGAGAATTTT AAGAAAGGGC
GAGGTTATTA GAGGACAAAG ATTTTATAAA AATGCATACA ATAATTTTTT AACGGTTGAA
ATTATAGCCA CAAAAGTTTC TTTTAACGGT GAGGATGATA TACTTATCGT GGCGAGAGAT
ATCTCAGATA AATTAAAGAT GGAAGAAGAG TTAAGACAAA AGGTAAAAGA GCTTAGCGGA
ATACATGAAT TTATTCTAAA TTTAAATAGA TGTCATCAGG AAGAGGAAGC TTATAATTTA
TTATCCCATA CTTTAATTCA TAAATTAGGA ATTGATACAG TTTCTATTTT CAAGATAAAT
CCATCTCTCA ATAGAATACA AGAACATCTT GTTTTTGGCA ATGGGAATTA TAAAAGCTGT
TTAGATAACA ATCCCCATTA CTGCAAAGTT TTCAATTCTC CACAAAATTT TATAGTAAAT
TCCCCAGATT CTTATAAATG CAATCAATTT TGTTCTGATT TTTGCTCATA TATGTGTTTG
TCTGTCGTTT CAAATGGCAA AACGATTGCA TTATTGTCAT TAATATCAAA AAAAGAAGGA
TTTTTTACAC CAGAAAAAGT TAGCTATATT AATGATTTAA TAAATATTTT TTCACCAGTT
TTATCAAATT TAAGACTTAT AGAGATAAAT AAAGAGTTAT CTATAAGAGA CCCATTAACT
GGACTTTACA ATAGAAGGTT TGCATTAGAG TTTATGAATA AAGAGATAGA AAAATCAAAG
AGAAATGGAA AGCCTTTAAG TATTGTCATG ATAGACCTTG ATGATTTTAA AAAAATTAAT
GATATTCACG GTCATTCTGC AGGAGATAAT ATATTAAAAA TTTTTAGTGA TGTATTAAAA
AAAGAGTTAA GAAAGTCAGA TATCTCTTGT AGATGGGGTG GAGAAGAGTT TTTATTAATA
CTCCCAGAAA CATCAAAAGA TAAAACTTTA GATGTAATAG AAAGAATTAG GATGACATTT
CAATTAAATA CAATGGGAAT TGTATCATCA CGCCCATATT TAACTGCGAG CATGGGAATT
GCATCTTACC CCGAGGACAG TGATAATATT GATGAAATTA TTAAAATTGC CGATGATAGG
CTTTATGTTG CCAAGAGAGA AGGGAAAAAT AGAGTAGTGA CACATTAA
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| Protein sequence | MQHYTKQVDA ENRISCLPVV DDNNLIGIIT EKDIVKYISK GITEDKIGDL ASKPVITVSF
NDTLDNVLKL IKEKNIRHLV VLNENDKIAG ILTQRDILRS LEFDYTRFLE KKLRFTKEAL
GLFPDPVIEL VDTGNEQILI WGNQKAAEIF GNLNSKNIED IIPEKEWSYI FYKLKKEGKV
EGIKFNTENK YFELSGVYFN IEERDYKGRI KIVLKDITTE YEKSEKFKKE LDILKKVINS
TEDMMIIYQP TTGKLKLWNN AVRLRLGFTD DELKNKTIYD IVEIDRNILN ENIQRILRKG
EVIRGQRFYK NAYNNFLTVE IIATKVSFNG EDDILIVARD ISDKLKMEEE LRQKVKELSG
IHEFILNLNR CHQEEEAYNL LSHTLIHKLG IDTVSIFKIN PSLNRIQEHL VFGNGNYKSC
LDNNPHYCKV FNSPQNFIVN SPDSYKCNQF CSDFCSYMCL SVVSNGKTIA LLSLISKKEG
FFTPEKVSYI NDLINIFSPV LSNLRLIEIN KELSIRDPLT GLYNRRFALE FMNKEIEKSK
RNGKPLSIVM IDLDDFKKIN DIHGHSAGDN ILKIFSDVLK KELRKSDISC RWGGEEFLLI
LPETSKDKTL DVIERIRMTF QLNTMGIVSS RPYLTASMGI ASYPEDSDNI DEIIKIADDR
LYVAKREGKN RVVTH
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