| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0710 |
|---|
| Symbol | |
|---|
| ID | 6331661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | - |
|---|
| Start bp | 732192 |
|---|
| End bp | 732926 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 642656998 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001930900 |
|---|
| Protein GI | 188996649 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTAA GATTGAATAA ATATATAGCA CAAAGTGGAA TATGTAGCAG AAGAAAGGCA
GATGAGCTTA TAAAAGAAGG AAAGGTTAAA GTAAATGGAG AAATTATCAA AGACTTAGGA
GCTAAAATAA ATCCAGAAAA AGATATAGTA GAAGTTGAAG GTAATATCAT AAAACCGGTA
GAGAAAAAGA TTTACATAAA AATCTACAAA CCTGTTGGCT ATCTTTCAGC AGTTGGAAAA
GATAAGTTTG GAAGAAAAAC ATTGACAGAT TTGCTTAAAG AATTAAATAT CAAAGAAAAC
TTATTTCCTG TTGGAAGGCT TGATTATAAT AGCGAAGGTC TTTTAATCTT AACAAACGAT
GGTGAGTTTG CAAACAAAAT TGCCCATCCA AAGCATAAAA TCAAAAAAGT CTATCACGTA
GAAGTGGTTC CAAAAGTTGA CGAAGAAACA CTAAATCAGA TGAAAAAAGG AGCTATTTTA
GAAGACGGCT TTTTTAAGCC AGATAAAGTT GAAATCTTAA AACACACAAA AGATAGTACG
TGGCTACTTT TTGAAATTCA TAGCGGAAAA AAGAGAATCT TAAGAAGATA TGTAAGTAAA
TTTAATCATA AAGTAAAAAG ACTTGTCCGT GTTAAAATAG ATAGCATTTC TATTGAAAAC
TTAAAGCCAC ATCAATTTAA ACATTTAACA GACAAAGAGG TAAGGTCAAT CTATGAAAGA
GATAGTGCTG AGTAA
|
|---|
| Protein sequence | MQVRLNKYIA QSGICSRRKA DELIKEGKVK VNGEIIKDLG AKINPEKDIV EVEGNIIKPV
EKKIYIKIYK PVGYLSAVGK DKFGRKTLTD LLKELNIKEN LFPVGRLDYN SEGLLILTND
GEFANKIAHP KHKIKKVYHV EVVPKVDEET LNQMKKGAIL EDGFFKPDKV EILKHTKDST
WLLFEIHSGK KRILRRYVSK FNHKVKRLVR VKIDSISIEN LKPHQFKHLT DKEVRSIYER
DSAE
|
|---|
| |