Gene SYO3AOP1_0673 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSYO3AOP1_0673 
Symbol 
ID6331456 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSulfurihydrogenibium sp. YO3AOP1 
KingdomBacteria 
Replicon accessionNC_010730 
Strand+ 
Start bp691035 
End bp692015 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content30% 
IMG OID642656958 
ProductCRISPR-associated protein Cas1 
Protein accessionYP_001930863 
Protein GI188996612 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAGAA GGTATTATAT AAACAACAGT GGAAGGCTAA AAAGAAAAGA AAATACAATA 
TTTTTTGAAA TCAGTGAAAA AGAAAGAAAA ATAATTCCAA TAAACGATAT AGACAGTATT 
TACATTTTTG GAGAAGTGGA TTTAAACACA AAAGTTTTAA ACTACTTAGC ACAAAACGAT 
ATCCCTGTTC ATATATTTAA CTATTATGGC TACTATTCAG GATCATTTTT ACCAAAAAAG 
AAAAATGTCT CAGGAATTTT GCTTGTAAGT CAAGTGAGTC ATTACACAGA TTATAGCAAA 
CGTCTGTACT TGGCAAAAAG TTTTATAGAA GGAGGAGTTT ATCATATCCT TAGAAATCTA 
AAAACCAATC AAGCAGAAGA AGAGGTTGAA AAAATCAATG AATTTTTAAA GCAATTGCCC 
GATGCAAACA CAATAGAAGA GGTCATGGCG GTTGAAGGAA ATATTAGAAA TATTTATTAC 
CAAGCATTTA ATAAAATCAT AAAAAATCAG GACTTTAAGA TAGATAAAAG AGAGTACAAC 
CCACCAACCA ATCCTATCAA CGCTTTAATT TCCTTTGGCA ACTCTGTATT GTACAGTGTT 
ATATTATCAG AGATTTATAA AACACATTTA GAGCCAACCA TTAGCTACTT ACACGAACCA 
TCAGAAAGAA GATTCTCTTT AAGCTTAGAT ATATCAGAAA TCTTTAAACC GTTAATAGTG 
GATACGGTGA TTTTTAATCT TCTAAACTAT GAAACGATAA ATCTTTCTCA TTTTAATCAG 
GATTTGAATT TTAGCTATCT AAACGATGAA GGAAGAAAGA TTTTTTTAAA ATATTTAGAG 
GATAAGCTAG AAACAACGAT TAAGCATAAA ACATTACAGA GAAATGTAAG TTATAGAACA 
TTAATAAGGC TTGAATGTTA TAAGTTGATT AAGCATCTGC TTGATGAAGA GGACTATAAA 
CCATTAAAGG CTTGGTGGTA A
 
Protein sequence
MSRRYYINNS GRLKRKENTI FFEISEKERK IIPINDIDSI YIFGEVDLNT KVLNYLAQND 
IPVHIFNYYG YYSGSFLPKK KNVSGILLVS QVSHYTDYSK RLYLAKSFIE GGVYHILRNL 
KTNQAEEEVE KINEFLKQLP DANTIEEVMA VEGNIRNIYY QAFNKIIKNQ DFKIDKREYN 
PPTNPINALI SFGNSVLYSV ILSEIYKTHL EPTISYLHEP SERRFSLSLD ISEIFKPLIV 
DTVIFNLLNY ETINLSHFNQ DLNFSYLNDE GRKIFLKYLE DKLETTIKHK TLQRNVSYRT 
LIRLECYKLI KHLLDEEDYK PLKAWW