| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0652 |
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| Symbol | |
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| ID | 6331121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | - |
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| Start bp | 670021 |
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| End bp | 671916 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 642656937 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001930842 |
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| Protein GI | 188996591 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGATT ATCCTATGTT AGAAAAAATA AATAACTATA AAGATTTGAA AAATTTAAAT
AAAGAAGAGA TCGAAAAACT CTGTGAGGAT ATAAGAAGCT ATATTATTGA TGTTACATCT
TTAAATGGCG GGCATATTGG ACCATCCCTT GGAACTGTTG AATTGACTGT TGCTCTACTT
ATGGCTTTTG ACCCTGAAAA AGACAAAATT GTATGGGATG TAGGACATCA AACATATGCT
TATAAAATTC TTACAGATAG AAAAGAGCAG TTTAGAACTT TAAGACAGTA TAAAGGAATT
TCTGGATTTT CTAAGATAAA AGAAAGTAAG TATGACCATT TTGGCACTGG ACATAGCAGT
ACATCTATTT CAGCAGCACT TGGTTTTAGA GTTGGAAAAG ATTTAAAAAA AGATGATGTT
TATACCATTG CTGTTATTGG CGATGGGGCT ATGACTGCTG GTCAGGCTTT CGAAGGATTA
AACAATGCTG GCTGGCTTGA CCCATCAAGG TTTATAGTAA TTTTAAACGA CAATCAAATG
TCTATATCTC CAAACGTTGG TGCTATATAT ACTTACTTTA ATAAGATAAT TACAAAGCAG
GTTTTCCAAA AACCAAGACA AAAATTAAAA GAAGCTATCA ATAAAATCTT TGGAGAGCAA
GGTGTAAAAA TATTTAGAAA GATAGAAGAA TATACAAAAG GGCTTTTTGC TCCGGGACTT
ATATTTGAAG AGCTTGGGTT TACATACGTT GGTCCAATAG ATGGACACAG TCTGTTTGAT
TTGGAGCAAA CCTTGGAAAA TATAAAACAG ATGAGAGGTC CGATTTTACT TCATGTGATT
ACTCAAAAAG GAAAAGGCTA TAAATATGCA GAAGAAAATC CAACCACATT CCACGGAGTA
TCTCCTTTTG ACAAAATCTC TGGCGTATTT AATAAATCAT CAAACTTGCC AACTTACAGC
AAGGTTTTTG GTGATGCGTT AGTAGAGCTT GCAGAAAAAG ATGATAAGAT CGTTGCCATT
ACACCTGCAA TGAAGGAAGG TTCTGGACTT GTAAAGTTTG CAGAAAAGTT TCCGGATAGA
TTTTTTGATG TAGGAATAGC AGAACAGCAT GCAGCAACAT TTGCAGGAGC ACTTGCACTT
GAAGGCTTTA AACCTGTTGC AGCTTACTAC TCAACCTTTT TACAAAGGGC TTACGACCAA
GTAATACACG ATATAGCACT TCAAGAACTA CCTGTATTTT TTGCGATTGA CAGAGGCGGT
TTAGTTGGTG ATGACGGTCC AACCCATCAC GGCGTTTTTG ACATTGCTTT TTTAAGACCA
ATTCCAAACA TGATTATAGC TTCTCCAAAA GATGAGCAAG AACTTAGAGA TTTACTTTAT
ATAGGATTAA ACAGCAAAAG ACCATTTGCC CTAAGATACC CAAGAGGTAC GGGATACGGT
GTAAAAATTG AAGGTTTTAA TACAATTGAA ATAGGAAGCT GGGAAATCTT AGACGAAGGA
AGAGATATAG CAATTCTTGC AGTTGGAAAG TATGTTTACA GAGCATTGGA AGTTAAAAAA
CAATTAAGAC TTAAAGGGTT TAATCCAACA GTAGTTAATG CAAGATTCAT TAAACCAATG
GATGAAAATT TATTAAATAA ACTTTTAAAA ACTCATGAAT TTGTGATAAC CGCTGAAGAT
GGAGTGTTAA ACGGTGGCTT TGGTTCAGCC GTTGCTGAGT TTGTAATTGA TAATGGTTAT
TCTAACAAAG TTTTAAGATT TGGCATTCCG GATAAATTTA TTGAGCATGG AAAGGTAGAG
CTATTAGAAA GAGATTTAGG TTTAGATGTA AACAGCATGG TAAACAAGAT AGAAGAATTT
TTAAAAGTTA AAAAAGCAGT TTTAAATACT GCTTGA
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| Protein sequence | MKDYPMLEKI NNYKDLKNLN KEEIEKLCED IRSYIIDVTS LNGGHIGPSL GTVELTVALL
MAFDPEKDKI VWDVGHQTYA YKILTDRKEQ FRTLRQYKGI SGFSKIKESK YDHFGTGHSS
TSISAALGFR VGKDLKKDDV YTIAVIGDGA MTAGQAFEGL NNAGWLDPSR FIVILNDNQM
SISPNVGAIY TYFNKIITKQ VFQKPRQKLK EAINKIFGEQ GVKIFRKIEE YTKGLFAPGL
IFEELGFTYV GPIDGHSLFD LEQTLENIKQ MRGPILLHVI TQKGKGYKYA EENPTTFHGV
SPFDKISGVF NKSSNLPTYS KVFGDALVEL AEKDDKIVAI TPAMKEGSGL VKFAEKFPDR
FFDVGIAEQH AATFAGALAL EGFKPVAAYY STFLQRAYDQ VIHDIALQEL PVFFAIDRGG
LVGDDGPTHH GVFDIAFLRP IPNMIIASPK DEQELRDLLY IGLNSKRPFA LRYPRGTGYG
VKIEGFNTIE IGSWEILDEG RDIAILAVGK YVYRALEVKK QLRLKGFNPT VVNARFIKPM
DENLLNKLLK THEFVITAED GVLNGGFGSA VAEFVIDNGY SNKVLRFGIP DKFIEHGKVE
LLERDLGLDV NSMVNKIEEF LKVKKAVLNT A
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