Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SYO3AOP1_0554 |
Symbol | |
ID | 6332327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
Kingdom | Bacteria |
Replicon accession | NC_010730 |
Strand | + |
Start bp | 569654 |
End bp | 570913 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 642656843 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_001930748 |
Protein GI | 188996497 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 67 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCATCAGG TATATAATTA CTTCGGATAT ATAGAAAAAA AACTTTACTG TGAAGAGGTT AGCATATTAA ATTTAGCTTC AAAAGTTGGC ACTCCATTCT TTGTTTACAG TAAAAAAGCA ATTTTAGATA AAATTAACCA GTATAAAGAA GCGTTCAAAG ATTATGATAC ATTAATCTGC TATGCTTTAA AAGCAAATTC TAATCTTAGT CTACTAAAAA TTTTTGAAGA AAATGGTGTT GGTGCTGACA TTGTATCCGG TGGAGAGCTT TATAAGGCAA AAAAAGCTGG ATTTTCTTCA AACAAGATAG TTTATGCTGG AGTTGGAAAA ACGGACTTTG AAATTAGTTA TGCTATAAGT GAAAACATTC TTTCTTTTAA CGTTGAAAGC TTTATGGAGC TTGATGTAAT CAATGAAATT GCGGGCAAAC AAGAAAAAAA AGCCAATGTG TCTATAAGAG TTAATCCTAA TGTAGACCCA AAAACCCATC CTTACATTTC AACAGGATTA AAGAAAAGCA AATTTGGAAT AGATATAGAC CAAGCATTAG ATGCTTATAA AAAGGCTGCG AAGCTTGAAA ATTTAAATGT GGTAGGCGTT CATTGTCATA TAGGCTCTCA GATAATGGAC ATTTCTGTAT TTAGAGAAGC TGCTGAAAAA GTCGTAGACC TTGTGTTTAA ACTAAAAAAA GAAGGAATCG AATTAAAATT TATAGATATG GGCGGTGGTC TTGGAGTTAA GTATCATCCT GACGATAACC CACCCACTCC AAAAGATTTA GCAGACGCAA TAATTCCTGT AGTGAAACAA ACCGGATTAA AGTTAATAAT AGAGCCGGGA AGGTCTTTGA TTGCTGAAGC CGGAGCATTA ATAACGAAAG TAATCTTTTT AAAAGATAAA CAAGAAAAAC ATTTTGTTAT TGTTGATTCT GGAATGAATG ACCTTGTAAG ACCTGCCATG TATAATGCTT ACCACCATGT TTTAAACGTT CAAGAAAAAG ATGAAGAGAT GATAGCTGAT ATAGTGGGTC CAATTTGCGA GACAGGAGAT TTTTTAGCTC TTGATAGAAA AATTGGAAAA GTAGAGAGAG GAGATTTGTT AGCCATAATG ACTGCCGGTG CATATGGTAG CAGCATGTCA TCAAACTACA ACGTAAGACC AAGAGCGTTA GAAGTATTGG TTGATGGTTC AAACTTTAAA GTAATAAAAG AAAGAGAAGA CTATAAACAT ATATCAAAAT ATGAAGAGGA AGTGCTATGA
|
Protein sequence | MHQVYNYFGY IEKKLYCEEV SILNLASKVG TPFFVYSKKA ILDKINQYKE AFKDYDTLIC YALKANSNLS LLKIFEENGV GADIVSGGEL YKAKKAGFSS NKIVYAGVGK TDFEISYAIS ENILSFNVES FMELDVINEI AGKQEKKANV SIRVNPNVDP KTHPYISTGL KKSKFGIDID QALDAYKKAA KLENLNVVGV HCHIGSQIMD ISVFREAAEK VVDLVFKLKK EGIELKFIDM GGGLGVKYHP DDNPPTPKDL ADAIIPVVKQ TGLKLIIEPG RSLIAEAGAL ITKVIFLKDK QEKHFVIVDS GMNDLVRPAM YNAYHHVLNV QEKDEEMIAD IVGPICETGD FLALDRKIGK VERGDLLAIM TAGAYGSSMS SNYNVRPRAL EVLVDGSNFK VIKEREDYKH ISKYEEEVL
|
| |