| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0539 |
|---|
| Symbol | |
|---|
| ID | 6332246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | - |
|---|
| Start bp | 555769 |
|---|
| End bp | 557220 |
|---|
| Gene Length | 1452 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 642656827 |
|---|
| Product | glutamate synthase (NADPH), homotetrameric |
|---|
| Protein accession | YP_001930733 |
|---|
| Protein GI | 188996482 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01316] glutamate synthase (NADPH), homotetrameric |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00000497626 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGA AGAAGGTTGT TTACAGAAGG CATGATAGAA ATAACATACC ATTACTACCA
CCAGAAATAA GAAAAAATAC GTTTAAAGAG TATGCTCTTG GATTTGGACA CACAGCCGCA
AAAGATGAAG CTGACAGATG TATTTTATGC AAAAAACCAC CTTGCCAAGA GCATCAAGGT
AAGTATGGTT GCCCAGTTTA TGGAGATATA AACCTTTGGA TGGAGCAGAT TCAGAATAAT
AATTTAATTG AAGCATTTAG AATACTTAGA GCAAAAAACC CTTTTTCTTC AATCTGCGGA
AGAGTTTGTC CACAGGATAG GTTATGTGAA AGCACATGTG TTTTAACATT TAAAGACAAC
GGTCAACCTG TAAACATTGG CGGTCTTGAA AGATTTGTAG GTGATTCAAT AAGAATGAGT
GGTATAAATT GGGAAGACCT AAAAGAGCCA CCAACAGGTA AAAAAGTAGC AGTGATTGGA
GCAGGACCTG CCGGATTGTC TGCTGCATAC TTCTTAGCTA AAAAAGGACA CTCGGTAACA
GTTTTTGAAG CTTTACCATT TACAGGCGGA GTTATGAGAT ACGGAATTCC AAAGCCAAGG
CTTGACAGAG AAGTTTTAGA TTGGGAAATT TCTTTAATAG AAAAACTTGG CGTTGAAATT
AAAACAGGAA TTAAAGTAGG AAAAGATATC TCATTAAACG ATTTAAGAAA ACAGTTTGAC
GCTGTGTTTA TCGGCGTTGG TTCTGGAAGA GGTAAAAAGA TGGGAATTCC AGGAGAAGAC
TTAAAAGGTG TTTATACAGC TATATCATTC TTGATGAAAG TTAACGTTGA TTATGTTGAC
GATATGCTTG CACCGGAGAC AGACATAGAA CTTCCAAGAA ACAAGAGGGT TGCAGTTATT
GGTGGTGGAT TTACTGCTGC AGACTGTATG TATACATCAA TAAGACTTGG AAATGAAACA
CATTTAGTAT ACAGAAGAAC AAGAGACACA TCCTCAGCAA GACAGGAAGA ATGGGACCAC
TTAGCAGAAG AGGGAGCAAT TTTAAGATGG TTAACTCAGC CGATAGAAGT AATCGGAAAC
GATAAAGGTG AAGTTGTAGG ATTAAAATGT ATAAAAATGG AGCTTGTGCC GGATGAAAAA
GGCGGAAGAC CAAAACCAGT AGAAGTGCCC GGTTCAGAGC ATATAATCGA ATGTGATGCT
GTTATCATGG CAGTAGGTCA AGGAGATAAC CCGCTTGCCT ACAAAGATGT TCCAGGATTA
AAAATAGACA AATGGAATAA CTTATCTACC GTTGATAAGA AATACAGAGC AAACGTTGAA
GGCATCTTTG CAGGTGGTGA TGTTGTAAAT GGTGGAGATA CTGTTGTTGT TGCAATCAGA
CATGGCAGAG ATGCAGCAGA AAGCATTCAT GAGTATTTAA TGACAAAAGA ATGGAAATAC
GGAGAAGATT AA
|
|---|
| Protein sequence | MEKKKVVYRR HDRNNIPLLP PEIRKNTFKE YALGFGHTAA KDEADRCILC KKPPCQEHQG
KYGCPVYGDI NLWMEQIQNN NLIEAFRILR AKNPFSSICG RVCPQDRLCE STCVLTFKDN
GQPVNIGGLE RFVGDSIRMS GINWEDLKEP PTGKKVAVIG AGPAGLSAAY FLAKKGHSVT
VFEALPFTGG VMRYGIPKPR LDREVLDWEI SLIEKLGVEI KTGIKVGKDI SLNDLRKQFD
AVFIGVGSGR GKKMGIPGED LKGVYTAISF LMKVNVDYVD DMLAPETDIE LPRNKRVAVI
GGGFTAADCM YTSIRLGNET HLVYRRTRDT SSARQEEWDH LAEEGAILRW LTQPIEVIGN
DKGEVVGLKC IKMELVPDEK GGRPKPVEVP GSEHIIECDA VIMAVGQGDN PLAYKDVPGL
KIDKWNNLST VDKKYRANVE GIFAGGDVVN GGDTVVVAIR HGRDAAESIH EYLMTKEWKY
GED
|
|---|
| |