| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0405 |
|---|
| Symbol | |
|---|
| ID | 6332415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | - |
|---|
| Start bp | 421094 |
|---|
| End bp | 422224 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 642656696 |
|---|
| Product | 2-nitropropane dioxygenase NPD |
|---|
| Protein accession | YP_001930602 |
|---|
| Protein GI | 188996351 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCTTAC CAAGTTTAAG AATAGGAAAA TATGAATTTG AATATCCAAT AATTCAAGGC
GGAATGGGCG TTGGTATATC GTGGGAAAAT TTGGCAGGCA ATGTTTCTAA GCATGGATGT
TTGGGGGTTG TATCCTCCGT TGGAACAGGA TACAGATATC CTAACTATGT AAAACTAAAA
GACGGAAGGC CAATAGGAAG TAAGTATATT CATAACAAAG AAGCTTTAAC AAAAATAATA
CAAGATGCAA AAGAAATAGC AGGTGGAGAA AAAGCTATAA TAGGCGTAAA CATTCTCTGT
GCCATTACAG AGTATGATAG AGTCGTTAGA GATTCTATTG AAGCCGGTGC TAAAATAATA
ATCTCCGGTG CTGGATTGCC GCTTAGACTT CCTGAATATG CGGAAGGTTC TGATGCTGCT
CTTGTGCCGA TTGTATCTTC TGCAAGGGCT TTAAGGGTAA TCTGTAAACA CTGGAAAAAG
AAGTATAACA GACTTCCTGA TGCAGTAGTG CTTGAAGGTC CATTGTCCGG AGGTCATCAA
GGGATACCTT ATGAAGACTG TTTTAAGCCG GAATATCAGT TAGAAAATCT TCTTCCTGAG
GTTTTAAAAG AAAGGGATAT GTGGGGAGAT TTTCCGGTCA TAGTTGCAGG TGGAATTTGG
AGTAAAGAGG ATATTGAATG GTATATTTCA CAAGGTGCTG CCGGCGTTCA GATGGGTACA
AGGTTTGTTG GAACTTATGA ATGTGATGCA TCACCAGAAT TTAAAAAAGT TATCATAAAT
GCAAAAAAGG AAGATATAGT TTTACTTAAA TCACCTGTTG GCTATCCGGC AAGGGGAATT
GTAACAAAGC TTATAAAAGA TATTGAAAGA GGAATAGCTC CGGAAGTTAA ATGTACGTCT
AACTGTGTAG TTCCATGTAA TCATGGAGAA GAAGCTAAAA AGGTTGGATA CTGTATAGCA
GACAGACTTG GAGATGCTTA CCTTGGAAGA GTAGAAACAG GATTATTCTT CTCCGGTGCT
AATGGATATA GAATTAAAAG ATTAGTTCAT GTGAAGGATT TAATAAGAGA GCTTGTTGAA
GGAATACCAT CCGGACAAGA AGAGCCGGAA GAAAGCTTAG TAGCAAAATG A
|
|---|
| Protein sequence | MGLPSLRIGK YEFEYPIIQG GMGVGISWEN LAGNVSKHGC LGVVSSVGTG YRYPNYVKLK
DGRPIGSKYI HNKEALTKII QDAKEIAGGE KAIIGVNILC AITEYDRVVR DSIEAGAKII
ISGAGLPLRL PEYAEGSDAA LVPIVSSARA LRVICKHWKK KYNRLPDAVV LEGPLSGGHQ
GIPYEDCFKP EYQLENLLPE VLKERDMWGD FPVIVAGGIW SKEDIEWYIS QGAAGVQMGT
RFVGTYECDA SPEFKKVIIN AKKEDIVLLK SPVGYPARGI VTKLIKDIER GIAPEVKCTS
NCVVPCNHGE EAKKVGYCIA DRLGDAYLGR VETGLFFSGA NGYRIKRLVH VKDLIRELVE
GIPSGQEEPE ESLVAK
|
|---|
| |