| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0393 |
|---|
| Symbol | |
|---|
| ID | 6332172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | + |
|---|
| Start bp | 410409 |
|---|
| End bp | 411956 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 642656684 |
|---|
| Product | Mammalian cell entry related domain protein |
|---|
| Protein accession | YP_001930590 |
|---|
| Protein GI | 188996339 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1463] ABC-type transport system involved in resistance to organic solvents, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00996] virulence factor Mce family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 89 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACTT CACAAAAAGT AGGAATATTT GTTTTATTGA TATCAATTTT AACAGGATAT
TTGATTATAA AATTTAGCGG CAAAGAGCTG GGTCAATCTT TTAAGACTTA TTATGTTTAT
TTTGATGATG CTCAAGGTTT ATCTAAGGGT GCGGATGTTC AGGTTTTAGG TGTAAAAGCA
GGTAGAGTTG AAGATATAGC CTTTGAAAAT GGAAAAGTTA AAGCACTTTT AAAGATAAAA
GAAGAAATAC CTTTATACAA AAATGCAACT GTTTCAATTA GAACTTATGG TTTAATGGGA
GATAAGTATA TCTATATAGA TCCGGGTAGT CCTAACGCAG GCAATTTAGC AGAAAATCAG
GTTATTCAAA ATCAAGCAAA AGTTGCTTCA ACGGAAGAGA TGATAAATCA AGTTCAGATT
TCAGCACAGA AATTTGCGCA ATTGATGGAT AATTTAAACA AAGCCTTGGG TGATGACAGA
TTAAAGAAAC TCATAGAAGA TTTTGATAAA TTTGCTTCAA ACACAAATGA TGTTGTAGTA
GAAAACAAAG AAGATATAAG ACAGTCTATA GCCAATATCA GACAGATTAC AGCAGACATT
AGACAACAGC TTCCAAGTAT TATCCAAAAT TTAGACAAAA CTCTTGAAAA CACTAAAAAT
ATAACGGCAG AAAACAGAGA AGATATGAGA AAGTTGATTG CTAACTTAAA AGACCTATCT
GTTGCACTGA AAGAAAAAGC TCCCAAGACT CTTGATTCTG TAGATAAGGC AGCTACACAA
ATAGAACAAG CTGTTAGTGA AAATAGACAA GATTTAAAGC TATCAATCGA AAATATCAGA
AAAGCATCTC AAAACTTAAA CGAACTTTTG GCAAAAGTTA ACGAAGGAAA AGGAACACTT
GGAAAATTAG TAAATCAAGA TGATATGTAT AATAATGTAA ATGAGGGTAT AAAATCCTTT
GCAGAGCCGT TTAAAGTTGT AAAAGAGTCA AATCTTGAAG TTATCATGCA AGGTGAGAAA
CATACAGGAA ACGATGATTC AAAAGCTGGT GCAGCATTTA GATTTATACC AACAGATGAC
AGATACTACT ATGTTGGAAT ACTTTCCAAC TCTCAAGGTT ATGTAGATAA AAAAGAAGAA
ATTACTTCAA ACGGAACCAC TACAACATAC GTAACAAAAA AATATGGAAT ACTTTTTGAC
CTTCAATATG CAAGAAAAAT ATTAACACTT GGCTCTACAC AGCTTTGGGC TCGTTTTGGT
ATTAAAGATT CTTCAGCAGG CCTTGGTGCA GATATAGTAT TAAACGATAA TTTGAAATTA
GTGTCAGACC TTTATAAATT TAATAGAAAA GATTTGATAA ATCAGCCAAA CAATCCCGAG
TTAGACATTG GACTTGAGTA CAGATTTAGT GGTTATCCAA TATTTGTAAA ATTTGGTGGC
TCTGATTTAA TAAACAGTTC TGTTAGAGGC TTTTATGTAG GTGGTGGATT TGTATTTACA
GACAATTATT TAAAATATCT TCTCGGCAGT TTGCCAAAAG TTAGATAA
|
|---|
| Protein sequence | MKTSQKVGIF VLLISILTGY LIIKFSGKEL GQSFKTYYVY FDDAQGLSKG ADVQVLGVKA
GRVEDIAFEN GKVKALLKIK EEIPLYKNAT VSIRTYGLMG DKYIYIDPGS PNAGNLAENQ
VIQNQAKVAS TEEMINQVQI SAQKFAQLMD NLNKALGDDR LKKLIEDFDK FASNTNDVVV
ENKEDIRQSI ANIRQITADI RQQLPSIIQN LDKTLENTKN ITAENREDMR KLIANLKDLS
VALKEKAPKT LDSVDKAATQ IEQAVSENRQ DLKLSIENIR KASQNLNELL AKVNEGKGTL
GKLVNQDDMY NNVNEGIKSF AEPFKVVKES NLEVIMQGEK HTGNDDSKAG AAFRFIPTDD
RYYYVGILSN SQGYVDKKEE ITSNGTTTTY VTKKYGILFD LQYARKILTL GSTQLWARFG
IKDSSAGLGA DIVLNDNLKL VSDLYKFNRK DLINQPNNPE LDIGLEYRFS GYPIFVKFGG
SDLINSSVRG FYVGGGFVFT DNYLKYLLGS LPKVR
|
|---|
| |