| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0297 |
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| Symbol | |
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| ID | 6331021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | - |
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| Start bp | 300645 |
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| End bp | 305384 |
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| Gene Length | 4740 bp |
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| Protein Length | 1579 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 642656577 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_001930496 |
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| Protein GI | 188996245 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form
[TIGR02388] DNA-directed RNA polymerase, beta'' subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGAAGCAA AAGAAAGAAA AGAAACAGTT AGATTTGATG CTATTAGATT ATCTCTTGCT
TCACCTGAAA TAATTAGGTC CTGGTCTCAT GGAGAAGTAA AAAAACCAGA AACTCTTAAC
TATAGAACAT TAAAACCAGA AAAAGATGGA CTTTTTGATG CAAGAATATT TGGACCTATA
AAAGACTATG AATGTTTATG TGGAAAATAT AAAAAAAGAA AGTATGAAGG AACAATTTGT
GATAGATGTG GTGTTGAAGT TACACGTTCT GATGTTAGAA GAGAAAGATT TGGACATATA
GAGCTTGCAT CTCCAGTTGT TCACATATGG TATTTAAAAT CTACACCAAG TAAAATAGGT
AGTTTGTTAG ATTTAACATC AAGAGATATT GAAAGAGTTG TTTATTTTGA ATCTTATTTA
GTAATAGAAC ATCCAACAGA GGAAGAAGAG GAAGCTTTTG AAAAAGACCC TAAATCTTTA
CCTCTAATGG AAGGTGGCCT TACAAAATAT GTAAAATTAC ACGTTGTTTC TGAAGATGAA
TTTAGAGAAA GAGAATATGA GTATTCAAAT GCAGAAAAAT ACGAATACGG AATGGGAGCT
GAAAAAGTTA AAGATGTTCT TGCAAGAATA GACTTAGAAA TACTTGCAAA AAGACTTAAA
AAAGACCTTC ATGGATATGC AGGAACGTTT GACGACTTAA ATCTAAGCTA CAAAATGAAC
TATCCAAGAC TTTACAATAA AGCTATCATT GAAATTGCAA GAAAGTTTTC AGAAGTAGGA
CTAAGATTTG GAGATATAGA GCCAACAGAA AAAGAGATAG ATGTTATTAT ATCACAAGGA
TATTACATTG TAATAGACCC AGCTTCTTCA GATTTAAAAT TTGGACAGAT CATAAATCCA
GAAAATGTAG ATTCTCTACC TGAAGGCGTT ATTGCTCTTA CAGGGGTTGA GGCATTAGAA
AAATTATATA AAGCTTATAG AGAAAAAGTA AAAGAAATAC CAATTTTTGA AGTTATCAAA
GAATCTGTTA GAAATGTAAT ATTAAAAGAA GGAACAGATG CAAGACTGAA GAAAATCATT
AGAAGATTAA GACTTGTAGA AGGTTTTATA GAGTCTGAAA ATAAACCTGA ATGGATGATA
CTTGAAGTTT TACCGGTTAT TCCACCAGAT TTAAGACCTT TGATAGCTTT AGATGGTGGC
AGATTTGCAA GTTCAGACCT TAACGACCTT TACAGAAGAG TTATTAACCG AAATAACCGT
TTAAAAAGAC TTATCGATTT AGACGCTCCA GAAATCATCA TTAGAAACGA AAAAAGAATG
CTCCAAGAGG CTGTCGATGC TCTTATCGAT AATGGTAGAC GTGGAAGAAT GGTCACTCAA
AACAACAGAC CATTAAAATC TCTTTCAGAC TCATTAAGAG GTAAAGAAGG AAGATTTAGA
CAAAACCTTC TTGGCAAAAG AGTAGACTAC TCAGGACGTT CTGTAATCGT TGTAGGTCCT
GAATTACAGA TGCATGAATG CGGTCTTCCT AAGCAGATGG CTTTAGAGCT ATTCAAACCA
TTTATATATA GAAGACTTGA AGAAAAAGGT TATGCTACAT CTATAAAATC AGCTAAAAAA
TTAGTTGAAG AAAAGGTACC AGAAGTTTAC GAATGTCTTG AAGAAGTTGT AAAACAACAT
CCTGTTCTTT TAAACAGGGC ACCGACATTA CACAGAATGT CTGTTCAAGC ATTCGAGCCA
AAATTAGTAG AAGGAAAAGC TATAAAACTT CATCCATTAG TTTGCCCTCC ATTTAACGCA
GACTTTGATG GCGACCAGAT GGCTGTTCAT GTACCACTAT CCGTTGAAGC TCAGCTTGAA
TCTTACATAT TAATGTTATC TACTCAAAAC ATTCTTTCAC CAGCCCATGG TAAACCAGTT
ACTATGCCAT CACAGGATAT TATTCTTGGC GTTCACTATA TGACTCAAGA ATTACCAAAT
GCTAAAGGTG AAGGAAAGAT ATTTGGCTCT CCGGAAGAAG CTGTAACTGC TTACGAATTA
GGCACAATAG ACTTACTAGC TAAAATAAAA GTTAGAATAA ATGGCAAAAT TGTTGAAACT
ACAGCCGGTA GAATAATCTT CAATCAAATA CTTCCGGAAG GTTATAAATT TGTAAATGAA
GTATTAGATA AGAAGAAAAT TTCCAAATTG ATTTCAGATA TTTATGAAAA ATACGGAAAT
GAGATTGCTG CTCAGACATT GGATAAAATT AAAGAAATAG GTTTTAGATT TGCTACTAAA
GCAGCTGTAT CTATTTCTGT TGCTGACTTA GTTGTTCCTA AGAAAAAAGC TAAAATTCTT
GAGAAAGCTA TAAAAGAAGC TGAAACAGTT TGGAAGCAGT ACGTAGATGG AATCATCACA
AAAGGTGAGA GACACAACAA AATCATTGAT ATATGGTCTC AGGCTACAAA CGAAGTAGCA
AAAGAAATGT TTAACGAGAT AGAAAAATCT GAAAGAGTAG AAAACGGTAA AAAATATCCG
GGTTATTTCA ATCCGGTTTA TATGATGGCA TCTTCTGGTG CAAGAGGTAG TAGAGACCAG
ATAAGACAGC TTGCAGGTAT GCGTGGTCTT ATGGCAAAAC ACTCAGGTGA ATTTATCGAA
ACTCCAATCA TGTCAAACTT TAGAGAAGGA TTATCTGTTG TTGAGTACTT TATTTCAACG
TACGGTGCAA GAAAAGGTCT TGCTGACACA GCTTTAAAAA CTGCAGTTGC AGGATACCTT
ACAAGAAGAT TAGCAGACGT TGCACAGGAC GTTATAATTA CAGGAGAAGA CTGTGGAACA
TTAAAAGGTA TAACGGTTAG CTCTATTATT GAAAGTGGTG AAATTGTTGT ACCATTTAAA
GACAGAATAA TTGGAAGATA CACAGCAGAA GATGTTTATG ACCCATATAC TGGAGAACTA
CTAATTTCTG CAAACGAAGA AATCACAGAA GAAGTTGTTG ATAAATTTGA AAAAGCAGGT
ATTGAAAAAG TAAAAATCAG GTCTGTATTA ACTTGTGAAA TGCCTCATGG TGTCTGTGCA
AAATGCTACG GCAGAGACTT AGCACAAAGA AAGCTTGTTG ATATAGGTGA AGCGGTTGGA
ATAATCGCTG CTCAGTCTAT TGGTGAACCG GGTACTCAGC TTACAATGAG AACGTTCCAC
ATTGGTGGTG CTGCTACAGC TAAGGAAGTC CAAACTCAGC ATAAAGCAAC CCATGATGGA
ACAGTAAAAC TTCAAAATGT AAAATTTGTC GTAGATAAAA AAGGTAGAAA ATTAATCATC
AATAGAGAAG GTTCGATTAA AATCCTTGAT AAAGAAGGAA AAACAATAGA AAGATTTCCG
GCACCATATG GAGCAGTTTT ATACGTTGAA GATGGTCAAG AAGTAAAAGA AGGTACAATT
TTAGCTGAAT GGGAGCCATT TAGCGACCCA ATCATTGCAG AAAAAGGTGG AGAAGTAGAA
TTAAGAGACG TTATCTTAGA TGTTACATTA AAAGAAGAAA GGGATAACAT CACGGGTAAA
ACAATTTATA CAATCACATT CTTAAGACCA AAAGACGCAC AACTCCATAC TCCAAGATTG
GTAATTAAAG GTGAAGATGG AAACGAGTAT GTTTATGACC TTCCAGTAAA TACAATCTTG
TTAATTCCAA AAGAAAATCT TGAAGAAGTT TGGGATAAAT GTTTTGCATG TTCTGAAGCA
GAAAAAACAG ATATTCACCA CAAATATTTA CAAGTTAAAA AAGGCTTTAA GGTATCAGAA
GGTGATGTAG TTGCTAAAAT ACCAAAAGAA AAAGCAAAAG TTAGAGACAT CGTTGGTGGC
TTACCAAGAG TTGAAGAGTT GTTAGAAGCA AGAGAACCTA AAAATAAAGC TATCATCACA
GAAATAGACG GTATTGTAAA AATCTACGAA GATGCAAAAG AAATTACATT AATAAATCCT
AAGGAAGGAA AAACAGAGAC TTACAAAGTT CCGGATACCA CGTTTGTCAT TGTAAAAAAT
GGTTCCTTTG TAAAAGCTGG ACAAAGCTTA GTTGATGATG GAAGTATCGT CGCAGAATTT
GATGGAATGG TAAGACTAAA AAGTGAAGGT TCAAGAATAG TTGTGTTTAA TAAAGAAACT
GGACAACAGA AAGATTACAA AGTTCCAAAA GGAAAATTCA TTATTGTTAA AGATAACTCT
GTTGTAAAAG CTGGAGACCC TCTAACAGAT GGTACTCCAA ACCCACACGA CATATTAAGA
GTAATGGGTA TAGAAGAGCT TGCGGCATTC TTAGTAAAAG AAGCACAAAT TGTTTACAGA
TTACAAGGTG TTGAAATCAA CGATAAACAC TTTGAAGTAA TCATAAGACA AATACTTAGA
AAAGTTAAAA TTGTAGACCC AGGAGATAGC AGATTTTTAC TCAACGAGAT AGTAGACAAA
CTTGACCTTG AAGAAGAGAT TAATAAGGTA ATTTCTGAAG GTGGAAGACC ACCAAAAGCT
GAGCCTGTTC TTGTTGGTAT TACAAAAGCT GCATTAACTA CAAGAAGCTG GATTTCTGCA
GCGTCATTCC AAGAAACAAC AAGAGTTCTT GCAGATGCGG CGGTTGAAGG AAAAGTAGAC
CCATTAAAAG GATTGAAGGA AAACGTTATC ATTGGTGGAA TTATTCCAGC CGGTACAGGT
ATAAAAGAGT ATTCGGAAGT TGAAGTAGTG TTAAAAGAAG AAGAAAAAGA GGAAGTGTAA
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| Protein sequence | MEAKERKETV RFDAIRLSLA SPEIIRSWSH GEVKKPETLN YRTLKPEKDG LFDARIFGPI
KDYECLCGKY KKRKYEGTIC DRCGVEVTRS DVRRERFGHI ELASPVVHIW YLKSTPSKIG
SLLDLTSRDI ERVVYFESYL VIEHPTEEEE EAFEKDPKSL PLMEGGLTKY VKLHVVSEDE
FREREYEYSN AEKYEYGMGA EKVKDVLARI DLEILAKRLK KDLHGYAGTF DDLNLSYKMN
YPRLYNKAII EIARKFSEVG LRFGDIEPTE KEIDVIISQG YYIVIDPASS DLKFGQIINP
ENVDSLPEGV IALTGVEALE KLYKAYREKV KEIPIFEVIK ESVRNVILKE GTDARLKKII
RRLRLVEGFI ESENKPEWMI LEVLPVIPPD LRPLIALDGG RFASSDLNDL YRRVINRNNR
LKRLIDLDAP EIIIRNEKRM LQEAVDALID NGRRGRMVTQ NNRPLKSLSD SLRGKEGRFR
QNLLGKRVDY SGRSVIVVGP ELQMHECGLP KQMALELFKP FIYRRLEEKG YATSIKSAKK
LVEEKVPEVY ECLEEVVKQH PVLLNRAPTL HRMSVQAFEP KLVEGKAIKL HPLVCPPFNA
DFDGDQMAVH VPLSVEAQLE SYILMLSTQN ILSPAHGKPV TMPSQDIILG VHYMTQELPN
AKGEGKIFGS PEEAVTAYEL GTIDLLAKIK VRINGKIVET TAGRIIFNQI LPEGYKFVNE
VLDKKKISKL ISDIYEKYGN EIAAQTLDKI KEIGFRFATK AAVSISVADL VVPKKKAKIL
EKAIKEAETV WKQYVDGIIT KGERHNKIID IWSQATNEVA KEMFNEIEKS ERVENGKKYP
GYFNPVYMMA SSGARGSRDQ IRQLAGMRGL MAKHSGEFIE TPIMSNFREG LSVVEYFIST
YGARKGLADT ALKTAVAGYL TRRLADVAQD VIITGEDCGT LKGITVSSII ESGEIVVPFK
DRIIGRYTAE DVYDPYTGEL LISANEEITE EVVDKFEKAG IEKVKIRSVL TCEMPHGVCA
KCYGRDLAQR KLVDIGEAVG IIAAQSIGEP GTQLTMRTFH IGGAATAKEV QTQHKATHDG
TVKLQNVKFV VDKKGRKLII NREGSIKILD KEGKTIERFP APYGAVLYVE DGQEVKEGTI
LAEWEPFSDP IIAEKGGEVE LRDVILDVTL KEERDNITGK TIYTITFLRP KDAQLHTPRL
VIKGEDGNEY VYDLPVNTIL LIPKENLEEV WDKCFACSEA EKTDIHHKYL QVKKGFKVSE
GDVVAKIPKE KAKVRDIVGG LPRVEELLEA REPKNKAIIT EIDGIVKIYE DAKEITLINP
KEGKTETYKV PDTTFVIVKN GSFVKAGQSL VDDGSIVAEF DGMVRLKSEG SRIVVFNKET
GQQKDYKVPK GKFIIVKDNS VVKAGDPLTD GTPNPHDILR VMGIEELAAF LVKEAQIVYR
LQGVEINDKH FEVIIRQILR KVKIVDPGDS RFLLNEIVDK LDLEEEINKV ISEGGRPPKA
EPVLVGITKA ALTTRSWISA ASFQETTRVL ADAAVEGKVD PLKGLKENVI IGGIIPAGTG
IKEYSEVEVV LKEEEKEEV
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