| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0185 |
|---|
| Symbol | hemD |
|---|
| ID | 6331383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | - |
|---|
| Start bp | 200670 |
|---|
| End bp | 201383 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 642656463 |
|---|
| Product | uroporphyrinogen-III synthase |
|---|
| Protein accession | YP_001930384 |
|---|
| Protein GI | 188996133 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1587] Uroporphyrinogen-III synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACA TAATCATCAC GAGAGAAGCG TCAGGTTTTG AAGAAGTAAA AGATTTATTC
ATAAAAGCAG GATTTAATCC TATATCTTTT CCATTAATCA GATTTGAGCC GGTAGAAATT
AAAAATTTTA ATCTTGAAGA TTATAAATAT TTAATCTTTA CAAGTAAAAA TGCAGTCAAG
TATTTCTTTT CTCAAATTCC AAAGATTGAT AAAAAAATCA TAGCTGTTGG AGAAAAAACA
GCAAAATACT TAGAAAAACT TGGATATAAA GATATAATCG TTCCGGAAGT CTTCAGTGCA
GAAGGCCTTA AAGCATATTT TGAAAAAAAC ATAGATACAT TTAAAGATAA AAAAATAGCT
TTAATAAGAG CATCAGAAGG AATGGACACA CTTTTAAACA GCAATTTCAA GATAGACCTT
ATTCCGGTGT ATGAAACGAA GCTAAACATT CCTGAAAATG TTGACGAAAT AAAGTCATTA
ATAGAGAATG AAAAGGTTTA TGCAATAGTA TTTTCAAGTC CCTCAACTTT TAAAGGTTTT
TTAAATATTT TTAAAGAAGA ATCAAAAAAG CTTTTAGACA AAATGCTGAC TGTCGCTATT
GGAAAAACTA CAAAAAATTT TATAGAAAGT CAAGGATTTA AAGTTGATGT AGTGCCTGAC
AAGTTTACAT TTGAAGAGAT TGTGAAGAAG TTAAAAGTGA TAAGTAAGGA TTGA
|
|---|
| Protein sequence | MKNIIITREA SGFEEVKDLF IKAGFNPISF PLIRFEPVEI KNFNLEDYKY LIFTSKNAVK
YFFSQIPKID KKIIAVGEKT AKYLEKLGYK DIIVPEVFSA EGLKAYFEKN IDTFKDKKIA
LIRASEGMDT LLNSNFKIDL IPVYETKLNI PENVDEIKSL IENEKVYAIV FSSPSTFKGF
LNIFKEESKK LLDKMLTVAI GKTTKNFIES QGFKVDVVPD KFTFEEIVKK LKVISKD
|
|---|
| |