| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0011 |
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| Symbol | |
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| ID | 6331949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | + |
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| Start bp | 9746 |
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| End bp | 12604 |
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| Gene Length | 2859 bp |
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| Protein Length | 952 aa |
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| Translation table | 11 |
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| GC content | 27% |
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| IMG OID | 642656291 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001930216 |
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| Protein GI | 188995965 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTACCT TTAGAGTTTG TCCGCATGAT ACAAAAGAGG GACTGGAAAA ATGGCTTAAA
ATCTCAGATA AAATAAAGCA AATTTTTAAA CAAGAAGTAG ATTTTAAACC TTATAAAAAC
TTCTACGAAG AAGAAGCATT AATATCAGTA GATAATTTTA AACCAGATAT ATATTATGCA
AGCTTTGATG CTGCTTTAAT TCTTTTACAA AAAAATTACA AACTTATAGG AAGATTTAAA
GGTTATTACG ATAAATTTCT TTTAATTAGT TTAAATAATC AAAAGGATTT CCAAAATATA
GCAATAGTTG ATAAACTTAG TTCTTATTGT ATTTTAAACA AAACAGGTCT TTATAATAAA
GAAGTTATTT TATATGAATC TTTTGATGAA ATCATAAATT CTTTATTAAA TGGAAAAGCT
GATGCTGGAG CGATATTTAA GGAATATTAT GATGAATTAG GTCAAGAAAT TAAAGATAAG
CTAAAAATCG TAGAAGAAAT AGATTTGGAT ATAAGCCATT ACTTTTTGGT ATCAGAAGAA
TTTTATGAAA AGAATTCCTT TAATATAATT ACATTTATCC AAGAATTAGA TTTACAAGAG
ATTTCTCAAG ACGAAATCAA TAAACTTAAA GAATATCATG AACTTGGAAA AATAGTTAGG
AATTTAATAA TACAGAGGAT TCTTATAGAA AGCTTAAAAG ATATTAATCA GCTAATTATA
TCTGCAGAAA CAGAAGAGGA ATTATTTCAA AGAATATGTG AAAGCCTTGT AGAAAAAAAT
CATTTTAAAT TTGTGTGGAT TGGAAAGAGA GAAGGAGACT TTATTAAGCC AGTATGTAAG
TATGGCAAAG ACGATGGATA TATAGATAAT TTAGTTGTAA GTGTCAGAGA AGACCTGCCG
GAGGGAAGAG GTCAATCAGG AAGAGCTTAC AGAGAAAATA GAATTATTAT AAATGAAAAT
ACATTAACGT CAGAATTTAT GACTCCATGG AAAAATCAGC TTCTAAAAAG AGACATATAT
TCATCGTTAG CTATTCCGGT AGAAAAAAAT GGAGAAGTTT ATTTAGTAAT TACTATCTAT
TCAACAAAGC CATTTGTATT TAGAAAAGAC TTTCTAACTT TATTTGAAGA ACTTAAACAA
GATATATCTT TTGCTTTAAA TAAAATAGAA AAAGATAAAG AAAATATACT TTTAAGAAAG
GCTGTAGATA ATTCAAAAAT GTGGCTTTTA ATCACTGATT CAAATGGAAC AATAGAGTAT
GTAAATCAAT ATGTTATAGA TTTGACAGGA TACACAAAAG AAGAAATAAT TGGCAAAAAT
CCAAGAATAT TTAAATCTGG AATACAGGAT ATAGAATTTT ACAAAGAATT ATGGAACACT
ATATTGTCGG GCAAACCATT TTCAGCAGTA TTTGTAAATA AAACAAAAGA TGGAAGACTA
ATTTATATAG ACCAAACCAT CTATCCAATT AAATTAAAAA ATAAAACACT TAAATTTGTT
TCCATTGGAA GAGATATAAC ACAAGAGAAA CTACTTTCAG AGGAAATAGA AAAATATAAA
TACTATGATA GTTTAACTGA GCTTCCAAAT TTTATATCAT TTAAAATTCA ATTCTCAGAA
ATAATTAAAA ACAAAATATA CGAAAAATTT GGATTAATAT TGATAGACAT TTATAACATG
TCTGTAGTTA ATGCTTCTTA TGAATTTGAA ACAGGCAATG AAATTTTAAA AGAAGTAGCA
AAAAATCTAA AAAAAGAATT TCCAGATGGA TATGCAGCCA GAATTGGAAG TGATGAGTTT
GCAATACTTA TTCCAAATAT AGAAAACGAG TCAATACTTA TTTATAAGAT TAGAGATGCT
TTAGATAAAG ATTTAAATAC TTCCAAAGGC AAAATTCATA TTTCTTACAA CGCTTCAATT
GTCTTATACA ATGAAGATGG TCAAACATTT GAAGAGCTTT ATAATAACGC TGTTCTCACT
TTAAACACAG CTAAAAAAGA AGGAGAAAAT GTAATAAAAT TCTATGAATC ACAGTTAAAT
AAAAAATTAG AAGAATATCT AACAGCTGAA AAGATTGTAG AAAAAGCATT TAAAAAGAAA
TTATTTAAAT TTTACTTCCA GCCATACTTT AAATCAGAAG ACTTTTCAGT AGCAGGATTT
GAATCATTAG TCAGGATAGT AGACGAAGAT GGAACTGTTT ATCCACCTAT AAAGTTTATA
GATTATCTTG AAAACAGCAA ATATATCACA AAATTTGAAG AATGGGCTTT AGAAGAAGTT
TCTCAAAAGA TAAAAAAATT TAACTCTTTG AATGATAAAA AAGATAGAAC AATATCTCTA
AACCTATCAC CAAAAGGACT GCTTGGATAC TCATTAAACT TAACATCAGA TGAACTATCA
GATAAAAACT TTGTTGAAAG GTTAAAATCT TTGCCAATAG AAACTCAAAA TAACTTAGTA
ATAGAAATCA CAGAAAGAAA TGTCATAAAA GATATAGAAA AATCTAAGAA GATATTTAAA
GACATTAAAG ATTTAAATAA AAACATAAAA ATAGCGATAG ATGACTTTGG AACAGGATAT
TCATCTTTAA CATATTTAAG AGATTTAACT ATTGATATAC TAAAAATAGA TATGTCTTTT
GTAAGGAACA TTGCAAGAAG TAGACAAGAC TTATCGTTAG TAAAATTCAT AATTGGATTA
GCTAAAGATT TTGGATTAAA AACAATAGCT GAAGGTGTAG AAACAGAGGG GCAGGTAAAA
TTTTTATCTT TACTTGGAGC TGATTATCTG CAAGGATTTT ATTTTGCAAA ACCAATGCCA
GAAGAAGAAG CTGTCAAGTT AATTATGGAG AGTATATAG
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| Protein sequence | MITFRVCPHD TKEGLEKWLK ISDKIKQIFK QEVDFKPYKN FYEEEALISV DNFKPDIYYA
SFDAALILLQ KNYKLIGRFK GYYDKFLLIS LNNQKDFQNI AIVDKLSSYC ILNKTGLYNK
EVILYESFDE IINSLLNGKA DAGAIFKEYY DELGQEIKDK LKIVEEIDLD ISHYFLVSEE
FYEKNSFNII TFIQELDLQE ISQDEINKLK EYHELGKIVR NLIIQRILIE SLKDINQLII
SAETEEELFQ RICESLVEKN HFKFVWIGKR EGDFIKPVCK YGKDDGYIDN LVVSVREDLP
EGRGQSGRAY RENRIIINEN TLTSEFMTPW KNQLLKRDIY SSLAIPVEKN GEVYLVITIY
STKPFVFRKD FLTLFEELKQ DISFALNKIE KDKENILLRK AVDNSKMWLL ITDSNGTIEY
VNQYVIDLTG YTKEEIIGKN PRIFKSGIQD IEFYKELWNT ILSGKPFSAV FVNKTKDGRL
IYIDQTIYPI KLKNKTLKFV SIGRDITQEK LLSEEIEKYK YYDSLTELPN FISFKIQFSE
IIKNKIYEKF GLILIDIYNM SVVNASYEFE TGNEILKEVA KNLKKEFPDG YAARIGSDEF
AILIPNIENE SILIYKIRDA LDKDLNTSKG KIHISYNASI VLYNEDGQTF EELYNNAVLT
LNTAKKEGEN VIKFYESQLN KKLEEYLTAE KIVEKAFKKK LFKFYFQPYF KSEDFSVAGF
ESLVRIVDED GTVYPPIKFI DYLENSKYIT KFEEWALEEV SQKIKKFNSL NDKKDRTISL
NLSPKGLLGY SLNLTSDELS DKNFVERLKS LPIETQNNLV IEITERNVIK DIEKSKKIFK
DIKDLNKNIK IAIDDFGTGY SSLTYLRDLT IDILKIDMSF VRNIARSRQD LSLVKFIIGL
AKDFGLKTIA EGVETEGQVK FLSLLGADYL QGFYFAKPMP EEEAVKLIME SI
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