| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_5418 |
|---|
| Symbol | |
|---|
| ID | 6309809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 5796736 |
|---|
| End bp | 5799060 |
|---|
| Gene Length | 2325 bp |
|---|
| Protein Length | 774 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642654100 |
|---|
| Product | two component transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_001928045 |
|---|
| Protein GI | 188584600 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain
[COG4566] Response regulator |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTCC CTGCGATCAG CTTGGATGCA CCACCGCCCC ATTCGCCGGA TCTCCTCGCC
GTGGGAGAGA TCGCAGCGGT TCCGGCGATG CTCGACATCA TCTGCCACGC CACCGGCGTC
GGCTTCGCAG CGGTTGTCCG GGTGACCGAA GAGCGTTGGC TGGCCTGCCG GGTCCGGGAC
GAGGCAAGCC TTGGCATCCG GGCGGGCGAT GTGCTTCGCG CCGATACGAT GCCCTGCCGG
GATGCATGGC AGAAGGGTGA ACCCGTCATC ATCAATGACG TCGGTGCTGG CGAGCGAGCC
GGGACGACTT CTGCTGGGAG GCCGTTCGGG TTTCGCAGTT ACATTTCTTT CCCGATCGTG
ACGTCGGACG GTGCGGTCTT CGGTACGCTC TGCGCCATCG GTGTGCAGCC GGCCCGGCTG
GACAGTCCGG ACATCGCGCA CATCTTCCGG CAGTTCGCGG CCCTGATCGG AACGCACCTC
GACGCCCGGC GGCAATCTGC CGGTGTCGAT CATCCGCGGG AGAAAGACGG CACCGCAGCG
CCGGCGCAGG GCGGACCGCT CGCGACGCTG ATCGAGCATC TACCTGTCGG CGCGGGGCTG
TTCGGGCCGG ACGGTCAGGT TCTCCTCGTC AATCCGGCCC TCCGGAACCT TGTCCGACGA
ACTCCGCCGT CATCCATTCC TGGCGAGGGA CCGGGCTGGA CCGGCTATGC GGCGGACGGT
GCAATCCTCG ATCCCCAGCG CCATCCGTTC CCGCGCGCTC TGCAGGGCGA CATCGTCTCG
GGCGCGCGCT TCCTCTGCCG GTCCGATGAC GGAACCGAAC AGTGGTTTCG GATCACCGGG
TTGCCCGCTC CGGCCGGTGC CGTCGGGGAC GGCCTGCGGA TCGCGTCGGC CCCGGCCGCG
CTCCTTCTCG TCGAGGCGGA GCACGGCTCG AACGGGGCCG AGCATGCCCT GCAACGGAGC
GAGGCGCGCC TGCAGGCGGC CGTCGAACTG GTCGGGCTGT CGCCCTATGG CTGGGATCCC
GCGACGGGTG CGCTGGAGTG GGACGCACGT CTCAAGGCGA TGTGGGGCTT GCCCGCGGAC
GCGCATGTCG ATCAGGCCGT CTGGCTGTCG GCGATCCATC CCGAGGATCG TCCGCGGGTG
GAGGCGGCGG TCACCCGATG CTGCGACCCG GCGGGGGATG GAGTGTACAA GATCGATTAC
CGCGTGATCG GGATCGAAGA CGGTGTCGAG CGCTGGGTCT CGACCCATGG ACGAACCCAG
TTCGAGAACG GCCGACCGAT CCGTTTCGTC GGGGTCGCGC TCGACATCAC CGAGCGGAAG
CGGGACGAGG CCGTAAGCCG CGCGCGCGCG GAACGCTTCC GGCAATTCGC CGAACATTCC
GCCAACGTCC TGTGGCTCGC CAATCTCAAG AGCCGGCGCC TGACCTATCT CAGCCCGGCC
GTGCGGCATG TCTGGGGCGT CCCGCCGGAG CGGCTGACTT CCATCGAAGA TTGGCTCGAC
ACGATCCATC CGGACGACCG CGACAGCGTC GAGCGTGCCG TCGAGCGGGT CGGAAGCGGA
GACGTCGTCG TGCTGGAATA TCGCATCCTG CGTCCCTCGG ATGGGATCGT GCGGCGGATC
CGGGACACCT TCTTCCCGAT CCGCGGCGAG GAGGGCGGCA TCCGCCACGT GGGCGGCATC
GCCGCGGACG TGACAGGACG GACCGGAACC CGCATCTACG TGGTAGACCG GGATGCGGAG
TCGCGGCAGA AGCTGCTCGC CCTCCTGCAT CCGGCCGGCT ACGAGGTTCA GCTCTTCGAG
AGCCCCGCGG CGCTGGCGGA GGTTGCGGAA TCATTGCAGC CGGGCTGCGT CATCCTCGAC
CTCGAAGCCG CCGAGCCGGA CGGTCTCACG GTGGCGAGGG CTCTCAAGGT CGGCCGGCTC
GCCCTGCCGG TGCTCGTGGT CGGGCGCAGC CACGGTGATG TCGGCTTCGG TGTGCGCGCC
ATGAAGGCCG GCGCCGTCGA TTATCTCGAG AAGCCGTGGC AGCCGTCCGC GCTGCTGACC
GCCGTCTCCG CCGCCCTGGC GGAGCTGCGC ACCGACAACG AGCGCAGCCA AGCGCGCGAC
GACGCCAAGC AACGCATCGG CGCCCTCTCG GCGCGGGAAC GGGAGGTGCT GGAGGGGCTG
CTCGCGGGCG GTACGAACAA GTCGATCGGC CGAGCCCTCG GCCTCAGCCC CCGGACCGTC
GAGATCCACC GGGCCCATGT GATGGAGACG CTGGGGGTTC GAACTCTGCC GGAGGCAGTG
CTGATGGCTG CCAAGGCGGG CGTGCAGCCG ACCGACGCCC TCTGA
|
|---|
| Protein sequence | MNVPAISLDA PPPHSPDLLA VGEIAAVPAM LDIICHATGV GFAAVVRVTE ERWLACRVRD
EASLGIRAGD VLRADTMPCR DAWQKGEPVI INDVGAGERA GTTSAGRPFG FRSYISFPIV
TSDGAVFGTL CAIGVQPARL DSPDIAHIFR QFAALIGTHL DARRQSAGVD HPREKDGTAA
PAQGGPLATL IEHLPVGAGL FGPDGQVLLV NPALRNLVRR TPPSSIPGEG PGWTGYAADG
AILDPQRHPF PRALQGDIVS GARFLCRSDD GTEQWFRITG LPAPAGAVGD GLRIASAPAA
LLLVEAEHGS NGAEHALQRS EARLQAAVEL VGLSPYGWDP ATGALEWDAR LKAMWGLPAD
AHVDQAVWLS AIHPEDRPRV EAAVTRCCDP AGDGVYKIDY RVIGIEDGVE RWVSTHGRTQ
FENGRPIRFV GVALDITERK RDEAVSRARA ERFRQFAEHS ANVLWLANLK SRRLTYLSPA
VRHVWGVPPE RLTSIEDWLD TIHPDDRDSV ERAVERVGSG DVVVLEYRIL RPSDGIVRRI
RDTFFPIRGE EGGIRHVGGI AADVTGRTGT RIYVVDRDAE SRQKLLALLH PAGYEVQLFE
SPAALAEVAE SLQPGCVILD LEAAEPDGLT VARALKVGRL ALPVLVVGRS HGDVGFGVRA
MKAGAVDYLE KPWQPSALLT AVSAALAELR TDNERSQARD DAKQRIGALS AREREVLEGL
LAGGTNKSIG RALGLSPRTV EIHRAHVMET LGVRTLPEAV LMAAKAGVQP TDAL
|
|---|
| |