Gene Mpop_5416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_5416 
Symbol 
ID6309807 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp5793459 
End bp5795357 
Gene Length1899 bp 
Protein Length632 aa 
Translation table11 
GC content70% 
IMG OID642654098 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_001928043 
Protein GI188584598 
COG category[T] Signal transduction mechanisms 
COG ID[COG3300] MHYT domain (predicted integral membrane sensor domain)
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTCACA CCGGCTACAA TCCGGCCCTC GTGGCGCTGT CCCTCGCCAT CGCCGTGCTC 
GCCTCCTACA CGGCGCTCGA CCTCGGCGGG CGTGTGCGCG GGACCACCTC GCGGCTGCGC
TGGGCTTGGC TCCTCGGGTC CGCCCTGGCG ATGGGGGGCG GCATCTGGTC GATGCACTTC
GTCGGCATGC TGGCCTTCGA GATGGGCCTG CCCGCCGCCT ACGATGTCGG CCACACGCTC
CTGTCCCTGG TGATCGCGAT CGGCGTGACG GGTGCGGCGC TGGCTTGGCT CGGCCGGAGC
CGGGCCGGAC GCTGGGATGT CCTCATCGCC GGTCCGGTGA TGGGGATCGG CGTGGCCGCG
ATGCATTACA CCGGGATGGC CGCCATGCGG ATGCCCGGCC ATCTCGCCTA CAGCCTGCCG
GTCGTGGCGC TGTCCGTCGG AATCGCCGTC ACCGCCGCGA CCGTGGCCCT GTGGCTCACC
TTTCGGCCGA CCAGCATCTG GCAGCGCTTC GCCGCCGCGC TGATCATGGG CGTGGCGGTC
GCCGGGATGC ATTATACCGG CATGGCGGCA GCGACGATCA CCGCCGAGGA GGCAGGCGCG
CATTCCGCGC ATTTCGCCGC CACGAGCGTG GATCAGCAGA ACCTCGCCCT CTACGTCGCA
GGCATCACCT TCGTGATCCT GTTCCTTGCC ATGCTCGCCT CCGCCTTCGA CCAGCAGCGG
ATCCAGGGCG AACTGCAGGC GAGCGAGGAA CGATTCCGGG CCGCCGTGCA GGCCGTGCGC
GGCGTCCTGT GGACCAACGA TCCGCAGGGC CGGATGACCG GCGAGCAACC GGGTTGGGCC
GCGCTCACCG GACAGAGCCG GGCTGAGTAC GAGGGCTTCG GCTGGGCCGA GGCCGTGCAC
CCGGACGACC GCCAGGCGAG CATCGAGACC TGGAACGCGA CGGTGGCCGC CCGCAGCACC
TTCGTCCACG AGCACAGGGT GCGGGCCCGG GACGGGCTGT GGCGGCATTT CTCGATCCGC
GCGATCCCGG TGCTCGACGC GCAGGGCGCC ATCCGCGAAT GGGTCGGCGT GCACACCGAC
ATCACCGATC AGCGCGAGGC CGAGGCCGAG CTGCGGGAAT CGAACGAGGA GATCCAGCGC
TACGCCTATA TCGTCAGCCA CGACCTGCGC GCGCCGCTCG TCAACGTGAT GGGCTTCACC
AGCGAGCTGG AAGCCGTGCG CCAGGAGTTG ACGACGCTGC TGCGCGACCA TCCGCAGGGC
GCGCGGATCG ATGACGACAT CACGGAAGCG CTGAGCTTCA TCCAGGCGGC GATCGTGAAG
ATGGAGCGCC TGATCGCGGC CATCCTGAAG CTGTCGCGGG AGGGGCGGCG CCAATTCATC
CCTGAGACGA TCGCGATGAC GCCCCTCATC CGCGGCATCG CCGACGCGCA GCGTCATCAA
GCCGACCGCA AGGGCGCAAC GGTGAGGGTG GCGGCGGATC TTCCCGCGAT CATCGCCGAC
CGTCTCGCCA TCGAGCAGAT CTTCGGCAAC CTCATCGACA ACGCCCTCAA ATATCTCGAT
CCGGCCCGGC CCGGCCGGGT CGAGGTCACG GCAGCGCCCG CGCCGGGCGA CCGGATCCGC
TTCGCCGTGT CCGATAACGG GCGGGGCATC GCGCCTCAGG ATCACGGCCG CATCTTCGAG
CTGTTCCGGC GCTCCGGGGC GCAGGACCAG CCGGGTGAGG GGATCGGGCT CGCCAGCGTG
AAGACTCTGG TGCGCGCGCT CGGCGGGCGG ATCGAGGTCT CGTCGCAGCC GGGGACGGGC
ACAACCTTTG TCGTGACGTT GCCCCGCGAG CCGGTTACAG GCCGAGGCGA GGCCGCGAAA
TCCCATCCTC CCGAAACGAT GCCCCTGGCC GCGGAGTAA
 
Protein sequence
MVHTGYNPAL VALSLAIAVL ASYTALDLGG RVRGTTSRLR WAWLLGSALA MGGGIWSMHF 
VGMLAFEMGL PAAYDVGHTL LSLVIAIGVT GAALAWLGRS RAGRWDVLIA GPVMGIGVAA
MHYTGMAAMR MPGHLAYSLP VVALSVGIAV TAATVALWLT FRPTSIWQRF AAALIMGVAV
AGMHYTGMAA ATITAEEAGA HSAHFAATSV DQQNLALYVA GITFVILFLA MLASAFDQQR
IQGELQASEE RFRAAVQAVR GVLWTNDPQG RMTGEQPGWA ALTGQSRAEY EGFGWAEAVH
PDDRQASIET WNATVAARST FVHEHRVRAR DGLWRHFSIR AIPVLDAQGA IREWVGVHTD
ITDQREAEAE LRESNEEIQR YAYIVSHDLR APLVNVMGFT SELEAVRQEL TTLLRDHPQG
ARIDDDITEA LSFIQAAIVK MERLIAAILK LSREGRRQFI PETIAMTPLI RGIADAQRHQ
ADRKGATVRV AADLPAIIAD RLAIEQIFGN LIDNALKYLD PARPGRVEVT AAPAPGDRIR
FAVSDNGRGI APQDHGRIFE LFRRSGAQDQ PGEGIGLASV KTLVRALGGR IEVSSQPGTG
TTFVVTLPRE PVTGRGEAAK SHPPETMPLA AE