| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_5094 |
|---|
| Symbol | |
|---|
| ID | 6312797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 5455771 |
|---|
| End bp | 5458983 |
|---|
| Gene Length | 3213 bp |
|---|
| Protein Length | 1070 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 642653776 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_001927725 |
|---|
| Protein GI | 188584280 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.695828 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGC CGGAGCTTCA GGTCACGACG CACTTCTCCT TCCTGCGCGG CGCCTCGAGC
CCGGAGGAGC TGTTCTCCGC CGCCAGCCTG CTCGGCATCC CGGCCCTCGG GATCACCGAT
CACGGCTCGC TTGCCGGGAT GGTGCGGGCG CATCAGGCGG CCAAGGTGAC GGGCGTGCGC
CTCGTCGTCG GCTGCCGGCT CGACCTCGAC GATTTCCTGC CCCTGCTCGT CTATCCGACC
GACCGGGCCG CCTATGGCCG CCTCTGCCGC CTGCTCAGCC TCGGCAAAGC CCGCGGCGGC
AAGGGCCGCT GCCGTCTGAC ATGGGCCGAC CTCGAAGCGT GGCAGGAGGG GCTTTTCGCC
GTCCTTCTGC CCGAGGGGCG GGAGGCCGCG CTCCCAAGCG ACCTTGCAAG CCACCTCGTC
CAACTCAGAA AAACATTCGG CGTCCGCGCC TCCTGCGCGC TGACCCGCCG CTTCCGCCCC
GACGATGCGG ATCGGCTCGA CGCTCTGGCC GCCGCCGCCC GCGCCGCACG GGTGGCGACC
GTCGCCACCG GCGACATCCT CTACCACGTC GCAGGGCGCC GCCGGCTGCA GGACGTGGTG
ACCTGCATCC GGCTCGGGCT CACCATCGAC CGGGCAGGCT TTGCCAAGGA GCGCCACGCC
GACCGCTTCC TCAAACCCCC GGACGAGACC GCGCGCCTGT TCGCCCGCTT CCCCGAGGCG
CTGGCGCGGG CGGGCGAGAT CGCCGCCGCC TGCACCTTCT CGCTGGACGA CCTCGCCTAC
ACCTACCCGA CGGAGGCCCG CGAGGACGGG CTCTCGCCGC AGGAGCGCCT GGAGGCTCTC
ACCTGGGCCG GGGCGGAGCG GCGCTATCCG GCCGGCGTAC CGGAGGCGGT GACGCGCCAG
TTGCGCCATG AGCTCGACCT GATCGGGCGG CTGGCCTACG CCCCCTACTT CCTCACGGTC
GAATCGATCG TGGCCTTTGC CGATCGCAAA AAGATCCTGT GCCAGGGGCG CGGCTCGGCG
GCCAATTCCG CGGTCTGCTT CTGTTTGCGG ATCACCTCGA TCGATCCGAT CCGGCAGAAC
CTGCTGTTCG AGCGCTTCGT CTCGGAGGCG CGCCGCGAGC CGCCCGACAT CGACGTCGAT
TTCGAGCACG AGCGCCGCGA GGAGGTGATC CAGTGGATCT TCGAGACCTA CGGCCGCCAC
CGCTCCGCGC TCACCGCCAT CGTCAGCCGC TTCCGCTCGC GGGGCGCCTT GCGTGAGGTC
GGCAAGGTGA TGGGCCTGCC CGAGGACGTG ACCGGCGCCC TCAACCGCCT GACCTGGAGC
TGGAGCAGCG AGGGCGTCGG CGAGCGCGAA TTGCGCGAAC TCAACCTCAA CCCCGACGAC
CGGCGCCTGC GCCTGACGCT CGAGATCGCC CGCGAGCTGA TCGGCACGCC GCGCCACCTG
TCGCAGCATC CCGGCGGCTT CGTGCTGACG CTGGACCGGC TCGACGAGCT GGTGCCGGTC
GAGCCGGCGG CGATGGCCCA CCGCCAAGTC ATCGAGTGGG ACAAGGACGA CATCGACGCC
CTCAAGTTCA TGAAGGTCGA CGTGCTGGGC CTCGGCATGC TCGGCTGCCT GCGCCGCGCC
TTCGATCTGT TGGCCGAGGT CAAGAACCAG CCGCGCGACC TCGCCTCGAT CCCGCAGGAG
GACGGGGCCA CCTACGCGAT GATCCGGCGC GCCGACACGC TGGGCGTGTT CCAGATCGAG
AGCCGCGCGC AGATGGCGAT GCTGCCGCGG ATGAAGCCCA GGACCTTCTA CGACCTCGTG
ATCGAGGTGG CGATCGTGCG CCCCGGCCCG ATCCAGGGCG ACATGGTCCA TCCCTACATC
CGCCGTCGGG AAAAGCGTGA GGAGGTGACC TACCCGACGC CCGAGCTGAA GGCGGTTTTG
GAGAAGACGC TGGGCGTGCC GCTGTTCCAG GAGCAGGCGA TGCAGGTGGC GATGGTCGGC
GCCGGCTTCT CGGCGATGGA GGCCGACGAG TTGCGCCGCT CCATGGCGAC CTTCAAGTTC
ACCGGCGGCG TCCACCGCTT CCAGACGCGG CTGGTCGAGG GCATGATCGC CAACGGCTAC
GCCCGGGATT TCGCCGAGCG CACCTTCAAG CAGCTCGAAG GCTTCGGCTC CTACGGCTTT
CCCGAGAGCC ACGCCGCCTC CTTCGCGCTG CTCGCCTACG CCTCCTCCTG GATGAAGTGC
CACCATCCGG ACGTCTTCTG CGCCGCGCTC CTCAACGCGC AGCCGATGGG CTTCTACGCC
CCCGCGCAGA TCGTGCGCGA CGCCCGCGCC CACGGCGTCG TGATCCGCCC GCTCGACGTG
AATTATTCGG AATGGGACTG CACCCTGGAA TCCCTCGGCG AGGGCCGAGA GCTGTTCGCG
GTGCGCCTGG GGCTGCGGCT GGCCAGCGGC CTGCCCGAGC GCGACGGCCG GCATCTGGCG
AAGATGCGTG GTGGGCGGCC CTTCGCCTCC CTGCCCGAAC TGGCAGACCG GGCCGGCCTC
CCCGCCACGG CGCTCACCTG CCTCGTGCGG GCCGATGCCT TCCGCTCCCT CGGCCTGAAC
CGGCGCGAGG CCGCCTGGGC GGCCAAGGCC CTGCGGCCCG ATCCCCTCCC CCTCTTCGCC
ACCCTGTCCG AACCGGCGCA GGCGGCCGAA CCCGCCGTAT CGCTGCCGGC GATGAGCGCG
GGCGGCGAGG TCGTCGCCGA TTACTGCGCC AAGGGCCTCA GCTTGCGGGC CCATCCCCTC
GCCTTCCTGC GCGGAACGCT GGGCAGGCTC GGCGCGCGGC CCTGTGCGGC GCTCGACCGG
GTGGCCAACG GCGCGTCGAT CGTCGTGGCC GGCATCGTGC TGATGCGCCA GCGGCCGGGC
TCGGCCAAGG GCACGATGTT CATGACCCTG GAGGACGAGA CCGGGATCGC CAACCTGATC
GTCCGCCCCG AACTGTTCGA CCGGCAGCGC CGGGTCGTGC TCGGCGCCCG GCTGATGGCC
TGCCGCGGAC GGGTGCAGCG GGTCGGCGAG GTGGTCCACC TCGTGGCCGC GGAACTCTTC
GACCGCTCCG GCCTGCTGCG GCGGATCGGC CAGGATATCG GCGAGGAACC CGACCTCGTC
CTGCGCACCG GCCGCGGCGA CGAGACCGGC CAGAGCGTGC GCCCCGACCC GCGCGGGGAT
GCGCTGCCGG TGCGGGCGCG GAATTTTTGC TAG
|
|---|
| Protein sequence | MSTPELQVTT HFSFLRGASS PEELFSAASL LGIPALGITD HGSLAGMVRA HQAAKVTGVR
LVVGCRLDLD DFLPLLVYPT DRAAYGRLCR LLSLGKARGG KGRCRLTWAD LEAWQEGLFA
VLLPEGREAA LPSDLASHLV QLRKTFGVRA SCALTRRFRP DDADRLDALA AAARAARVAT
VATGDILYHV AGRRRLQDVV TCIRLGLTID RAGFAKERHA DRFLKPPDET ARLFARFPEA
LARAGEIAAA CTFSLDDLAY TYPTEAREDG LSPQERLEAL TWAGAERRYP AGVPEAVTRQ
LRHELDLIGR LAYAPYFLTV ESIVAFADRK KILCQGRGSA ANSAVCFCLR ITSIDPIRQN
LLFERFVSEA RREPPDIDVD FEHERREEVI QWIFETYGRH RSALTAIVSR FRSRGALREV
GKVMGLPEDV TGALNRLTWS WSSEGVGERE LRELNLNPDD RRLRLTLEIA RELIGTPRHL
SQHPGGFVLT LDRLDELVPV EPAAMAHRQV IEWDKDDIDA LKFMKVDVLG LGMLGCLRRA
FDLLAEVKNQ PRDLASIPQE DGATYAMIRR ADTLGVFQIE SRAQMAMLPR MKPRTFYDLV
IEVAIVRPGP IQGDMVHPYI RRREKREEVT YPTPELKAVL EKTLGVPLFQ EQAMQVAMVG
AGFSAMEADE LRRSMATFKF TGGVHRFQTR LVEGMIANGY ARDFAERTFK QLEGFGSYGF
PESHAASFAL LAYASSWMKC HHPDVFCAAL LNAQPMGFYA PAQIVRDARA HGVVIRPLDV
NYSEWDCTLE SLGEGRELFA VRLGLRLASG LPERDGRHLA KMRGGRPFAS LPELADRAGL
PATALTCLVR ADAFRSLGLN RREAAWAAKA LRPDPLPLFA TLSEPAQAAE PAVSLPAMSA
GGEVVADYCA KGLSLRAHPL AFLRGTLGRL GARPCAALDR VANGASIVVA GIVLMRQRPG
SAKGTMFMTL EDETGIANLI VRPELFDRQR RVVLGARLMA CRGRVQRVGE VVHLVAAELF
DRSGLLRRIG QDIGEEPDLV LRTGRGDETG QSVRPDPRGD ALPVRARNFC
|
|---|
| |