| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_5057 |
|---|
| Symbol | |
|---|
| ID | 6313252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 5420635 |
|---|
| End bp | 5421396 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642653739 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001927688 |
|---|
| Protein GI | 188584243 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0217547 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGG AGAGGAAATC CGTCCTCGTC GTCGGCGGCG CCTCCGGGCT CGGCGCGGCG
ACCGTTCGCG CCCTGGCATC GGCCGGTTAC GGCGTGACCT TCACCTACCG CTCCTCGCCG
GAGCGCGCCG GGGCGCTCGC CGACGAGCTG GTGCGGACGC ATGGAGAGGG GCGTGTCACC
ACCCGCGCTC TCGACCTGTC GGACCGCGAC GCAATCGAAG CATTCTGCGA AACGATCGAG
GGGCAGGGTT TCTACGGCTA CGTCCACAAT GCCGGCCAGT CGGCGGATGC GCTGGCGGCC
ATGCTCGACC GCGAGCGGGC CGAGGCGGCG ATGCAGGTGA ACTTCTGGTC GATGACCCGG
ATCGCCAAGG CGCTGGTGCG CGGGATGATC CGGGCCCGGT CGGGCCGCAT CGTCGCCATT
GGCTCGGTGG CCGCGCTCCA GGCCAATGCC GGCAACGCGG CCTATGCGGC GACCAAGGGC
GCCCTGATCG CCTATTGCCG GACGCTCGCG ATCGAATCGG CCAAGCGCGG GGTGACGGTC
AACGTCATCG CGCCCGGCTT CATCGACACC GAGATGCTGG CGGCCTATGC CAGCCACCGC
GAGGGCATCG AGCGCCAGAT CCCGCTCGGC CGGTTCGCGC GGCCGGAGGA GGTCGCGGCG
ATGGCCGCCT TCCTGATCGG GGAGGGCGGG GCCTACATCA CCGGCGCGGT TCTCCCCGTC
GACGGCGGCC TGACTGCGAT GATGGGCATC CATCGCACCT GA
|
|---|
| Protein sequence | MSEERKSVLV VGGASGLGAA TVRALASAGY GVTFTYRSSP ERAGALADEL VRTHGEGRVT
TRALDLSDRD AIEAFCETIE GQGFYGYVHN AGQSADALAA MLDRERAEAA MQVNFWSMTR
IAKALVRGMI RARSGRIVAI GSVAALQANA GNAAYAATKG ALIAYCRTLA IESAKRGVTV
NVIAPGFIDT EMLAAYASHR EGIERQIPLG RFARPEEVAA MAAFLIGEGG AYITGAVLPV
DGGLTAMMGI HRT
|
|---|
| |