| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_5024 |
|---|
| Symbol | |
|---|
| ID | 6313260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 5383661 |
|---|
| End bp | 5384806 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642653705 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_001927655 |
|---|
| Protein GI | 188584210 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.815107 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.264656 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGCA GTCTCAGGCC TTCTTTCCTC GTCACGCCGC TGATCGCCGC CGCGCTGCTG
GGGGCCGGGC CGGCCGTCGC GCAGATGCCG GGCGCGCCGC CACCCGGCGT GACCGTCGCC
AAGCCGGTGG TGAAGGAGAT CGTCGAGCAG GACCAGTATA CCGGCCGCTT CGACCCGATC
GAGTTCGTCG AGGTCCGCGC CCGCGTGACC GGCTACCTCG ACAAGATCCA GTTCCAGGAC
GGCGCCAACG TGAAGAAGGG CGATGTGCTC TTCGTCATCG ACCGCCGCCC CTACAAGGCG
GCGCTGGAGC AGGCGCAGGC CGCGCTCACC TCGGCCAAGG CGCGCCTCTC CTTCACCCAG
ACCGATCTGG AGCGCGCCCA GGTTCTCTCG CGCGGCGGCA ACATCTCCGA GCAGGTCACC
GACCAGCGCC GCCAAGCCTC GCAGACCGCC CAGGCCGACG TGGACAGCGC GGAAGCCGCC
CTCCGCAACG CTCAGCTCAA CTACGACTTC ACGGAAGTGA AGTCGCCGAT CAACGGGCGG
ATCAGCCAGC GCCTCGTCAC CGAGGGCAAC ATCGTCAGCA CCGACCAGAC GATCCTGGCC
CGGATCGTCT CGCTCGACCC GATCTATTTC GGCTTCAACG TCGATGAGCG CTCGTTCCTG
AAGTACCAGG GCAGCCTCGG CATCGGCATG GGCCAGATGC AGCGCGGCAA GGGCGCCCCG
GTGCTGATCG CCCTGTCCGG CGAGGAGAAG CCGACCCGCA AGGGCACGCT CGACTTCGTC
GACAACCGGG TCGACTACCA GACCGGCACG ATGCTGCTGC GCGCCACCGT CGAGAACCCG
GACGGGTTCA TCAAGCCGGG CCTGTTCGGC ATCGTGTCGA TGCCCGCGAC GAAGCCCTTC
CAGGGCATCC TGATCCCCGA CGAGGCGGTC TCGGCCAACC AGGACAAGCG CATCGTCTAC
GTGCTCGGCG AAGGCGACAA GGTCGCGGCG CGGACCGTGA AGCTCGGCCC CATCGTCGAC
GGCTACCGCG TGGTCCGCGA CGGCCTGAAG GGCGACGAGC TCGTGGTCGT CAACGGCGTC
GCCAAGGTCC GCCCCGGCGC GCAGGTGAAG CCCGAGACGA CCGAACTGCC GCCGTCGAAG
AAGTGA
|
|---|
| Protein sequence | MMRSLRPSFL VTPLIAAALL GAGPAVAQMP GAPPPGVTVA KPVVKEIVEQ DQYTGRFDPI
EFVEVRARVT GYLDKIQFQD GANVKKGDVL FVIDRRPYKA ALEQAQAALT SAKARLSFTQ
TDLERAQVLS RGGNISEQVT DQRRQASQTA QADVDSAEAA LRNAQLNYDF TEVKSPINGR
ISQRLVTEGN IVSTDQTILA RIVSLDPIYF GFNVDERSFL KYQGSLGIGM GQMQRGKGAP
VLIALSGEEK PTRKGTLDFV DNRVDYQTGT MLLRATVENP DGFIKPGLFG IVSMPATKPF
QGILIPDEAV SANQDKRIVY VLGEGDKVAA RTVKLGPIVD GYRVVRDGLK GDELVVVNGV
AKVRPGAQVK PETTELPPSK K
|
|---|
| |