| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_5008 |
|---|
| Symbol | nirA |
|---|
| ID | 6313784 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 5360209 |
|---|
| End bp | 5361999 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642653689 |
|---|
| Product | ferredoxin-nitrite reductase |
|---|
| Protein accession | YP_001927639 |
|---|
| Protein GI | 188584194 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0155] Sulfite reductase, beta subunit (hemoprotein) |
|---|
| TIGRFAM ID | [TIGR02435] precorrin-3B synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.60308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.203418 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGACG AATTCAACGC CGAGCAGAAG CGGTATCTCG AAGGCTTCGC CTCGGGCATC
GCCGCCGCCC GGATGACCGG CGGCCTCGCC CTGGGGCAGG CTCCGGCGGG CGCGCCGGCC
GAGCCCACGG GGCCGGACGC GATCCACATC AAGGCGCAGG ACCGCACCGT CAAGGAAGGC
GGCAAGCTCT GCGAGCAGGA GAAGTGGAAG CGCGCCGAGA ATCCGTTCGA CGGCCACAAC
CGCCTGAAGG CGGAGGCCGC CACGGGCAAG CAGCCCAAGC CCGAGGACAA TTTCCGCTGG
CGCTACCACG GCATGTTCTG GGTCGCGCCG ACCCAGACCT CCTACATGTG CCGGATCCGG
GTTCCGAACG GCATCCTGCA GCACTGGCAG TTCGCCGGCC TCGCCGACCT CGCGGACGCC
CATGGCGGCG GCTACAGCCA CGTCACCACC CGCGCGGGCC TTCAGGTGCG CGAGATCGCG
CCTGAGCACG CCCAGCCCTT CCTCGACGGG CTCATCGATC TCGGCCTGAC CGCGCAGGGC
GCGGGTGCCG ACAACATCCG CAACGTCACC GGTTCGCCCG CCGCCGGCAT CGACGCGCAG
GAACTGCTGG ACACCCGTCC GCTCACCAAG TCCTGGCACA ACTGGATCCT GAACGACCGC
TCGCTCTACG GGCTGCCGCG CAAGTTCAAC GTCTCCTTCG ACGGCGGCGG CGTGATGCCG
GCGCTCGAAG AGACGAACGA CATCGGCTTC CAGGCGATCC AGGTGCTCGA GGGCGCCGCG
GTCGCGCCGG GCGTCTGGAT GCGCCTCGTG CTCGGCGGCA TCTCGGGCCA CAAGGATCTG
GCCCGCGACA CCGGGATCGT CCTCAAGCCC GAGGACTGCA ATCGCGTGGC CGACGCGATC
ATCCGGGTCT TCATCGAGAA CGGCGACCGG ACCAACCGCA ACAAGGCCCG GATGAAGTAC
GTCCTCGATG CCTGGGGCTT CGACAAGTAC ATCGCCGCCG TCGAGGAGAA GCTCGGGCGC
AAACTCGACC GGGTCGACGC CGCCCATGTC GCCCCGCGCA AGCCCACCGA TCGCTTCAGC
CATGTCGGCG TCCATGCCCA GGTCCAGCCC GGACTGAACT GGGTCGGCGT GGTGCTCCCC
GTCGGCAAGA TGACCACCGA CCAGATGCGC GGGCTGGCGA AGATCGCGGC GGAATGCGGC
GACGGCCAGA TCCGCATGAC GGTGTGGCAG AACTTCATCT TCTCCGGCGT GCCGGACGCC
AAGGTGGCCG AGGTCGAGAC CCGGGTGCTC GCGCTCGGGC TCACGGTGAA GGCCGCCGGC
ATCCGCTCGG GCCTCGTGGC CTGCACCGGC GCCCGCGGCT GCAAGTTCGC GGCCTCCGAC
ACCAAGGGCC ACGCGATGAT CATCGCCGAC CATGTCGAGC AGACCGTACC GGCCCTCGAC
GTGCCGGTGA ACGTCCACCT CACCGGCTGC CACCATTCCT GCGCCCAGCA CTACATCGGC
GATATCGGGC TCATCGGCGC CAAGGTCGTC GTTTCGGAGG AGGGCGACAC CGTCGAGGGC
TACGACGTCG TGGTCGGCGG CGGCTTTGCC GAGAACCCGA AGATCGGCAC CGAGATCTGG
AAGGCGGTGA AGGCCGAGGA CGTGCCGACC CGCGTCGAGG CCCTGCTCAA CGCCTATCTC
GCCCGCCGCC AGGGGCCGGA GGAGAGCTTC CAGGCCTTCA CCGCGCGCAC CGGCCCCGAA
GCCCTGCGCG ACGCCGCCGA AGAACAACCC GCCCTCAAGG CCGCCGCATG A
|
|---|
| Protein sequence | MADEFNAEQK RYLEGFASGI AAARMTGGLA LGQAPAGAPA EPTGPDAIHI KAQDRTVKEG
GKLCEQEKWK RAENPFDGHN RLKAEAATGK QPKPEDNFRW RYHGMFWVAP TQTSYMCRIR
VPNGILQHWQ FAGLADLADA HGGGYSHVTT RAGLQVREIA PEHAQPFLDG LIDLGLTAQG
AGADNIRNVT GSPAAGIDAQ ELLDTRPLTK SWHNWILNDR SLYGLPRKFN VSFDGGGVMP
ALEETNDIGF QAIQVLEGAA VAPGVWMRLV LGGISGHKDL ARDTGIVLKP EDCNRVADAI
IRVFIENGDR TNRNKARMKY VLDAWGFDKY IAAVEEKLGR KLDRVDAAHV APRKPTDRFS
HVGVHAQVQP GLNWVGVVLP VGKMTTDQMR GLAKIAAECG DGQIRMTVWQ NFIFSGVPDA
KVAEVETRVL ALGLTVKAAG IRSGLVACTG ARGCKFAASD TKGHAMIIAD HVEQTVPALD
VPVNVHLTGC HHSCAQHYIG DIGLIGAKVV VSEEGDTVEG YDVVVGGGFA ENPKIGTEIW
KAVKAEDVPT RVEALLNAYL ARRQGPEESF QAFTARTGPE ALRDAAEEQP ALKAAA
|
|---|
| |