Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpop_4954 |
Symbol | |
ID | 6311119 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium populi BJ001 |
Kingdom | Bacteria |
Replicon accession | NC_010725 |
Strand | + |
Start bp | 5294072 |
End bp | 5297515 |
Gene Length | 3444 bp |
Protein Length | 1147 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 642653635 |
Product | double-strand break repair helicase AddA |
Protein accession | YP_001927585 |
Protein GI | 188584140 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.218744 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACGCCC CGCTGACCGG CTTCACCGTC GATGACCTGA CCAAGGCGGC CCAGCGCCGG GCGGCGGACC CGCGCCTCTC GGCCTGGGTC TCGGCCAATG CGGGAGCGGG CAAGACCAAG GTGCTCACCG ACCGGGTGCT GCGCCTGCTC CTCGACGGGG CCCCGCCCGG CCGCATCCTC TGCCTCACCT TCACCAAGGC GGCGGCCGCC AACATGTCGA TCCGCGTGTT CCAGCGCCTC GGCCGCTGGG TGACGCTGGA CGACGCGGCG CTGACCGCCG AGCTCATCGA ACTCACCGGC GAGCGGCCGG CCCGCGACAC CCTGCGGCTC GCCCGCCGCC TGTTCGCCCG CGCCGTCGAG ACGCCGGGGG GCCTCAAGAT CGAGACCCTG CACGCGCTCT GCGAGCGGCT GCTGCACATG TTCCCGTTCG AGGCCAACGT GCCGGCCCGC TTCGTCGTGC TCGACGACAA CCAGTCGCGC GAGGCGTTCG AGATCGAGAC CGACAACGTG CTCGCCGACG CGTTCCTCGG CAACGATCAG ACGCTCTCCG ACGCATTCGC CGTCGTGGGC GCGGAAGCCT CCGGCGATAC CCTGCGCGAG GCGATCCGCG CCGCCATGCG GACCCGCGCC CTGTTCTCCG ACCATCGCGC CCTGGAGCCG GCGCTCGCCC GCCTGCCGCG CGCGCTGGCG CTCGCGGACG GCGCCAGCGT CGCGACCATC GAGAGGGCGA TCCTGGAGGG CAGCACGCTG GGCGACTGGC GCGCGGTCGC AGGCCGGCTG CGCACCGGCA AGGCCACGGA CGAGCGGCTC GCCGACGGGC TTGTGGAGGC GGACGCCGCC CTCGAAGCGG GCAAGGCCCT GGCGCCCTAC CGCTCGGTCT TCTTCACCGA CAAGGACGAG CCGCGGGCGG CGAAGTCGTT CGGCACCAAG GCGGTGCCGG AGGAGGTGAA GCAGGCGCTC CTCGACGAGC AGGCCCGGCT GATCCCGCTC TTCGACAGCT TGCGCGCCGC CCGCGCGCTC GCCCGGACGC AGGGGCTGTT CCGGCTGGCC GCCGAGATCC ACCGCCGGGT CGAGGCGCAG AAGACCCGGC TCGGCGCCCT CGATTTCGAC GACCTGATCC ACAAGACCCT CGACCTGCTC TCGCGGGTCG GCGCCTCCTG GGTCCTGTAC AAGCTCGACC GCGGCGTCGA TCACGTCCTC GTCGATGAGG CGCAGGACAC CAACCCGCAG CAATGGGAGA TCCTGCGCAC CCTCACCGCC GAGTTCGCGG CGGGCGAAGG GGCACGGGGC CTGACCCGCA CCCGCTTCGC CGTGGGCGAT CCCAAGCAGT CGATCTACAG CTTCCAGGGT GCCGACCCGC GGGAGTTCGA GCTGACCCGC CGCGCCTGGG AGCGGGCGGC GAAAGGCGCG GAACTCGACT TCGCCGATGT CAGCCTGCGG CTGTCCTTCC GCACCGCGAG CCACGTGCTC GCCGCGGTCG ATGCGGTGTT CCGCGTGCCG GAGCACTTCG CCGGCCTCTC CTTCGAGGCC GGCACGCCGG GCACCGTGCA CGCCTCTGCC CGGGCCGGGG TGCCCGGCGC GGTCGAATTG TGGGGTATCG AGGAGCCGGC GGAGGCCGAG GAGCCCGATG CCTGGGCCGC GCCCGTCGAT GCGCCCGAGC CCAACGCTCC GGCCATCGTC ACGGCGCGCC GCATCGCCCG TGCGGTCAAG GCCTGGACGA CCCGGGGCGA TGCCTGCGGC CGGGTCTGGC GGCCCGGCGA CGTGCTGATC CTCGTGCGCA AGCGCTCGGC CGCCTTCGAG GAGGTGATCC GCGCGCTCAA GGGGCTCGGC GTGCCGGTGG CGGGTCAGGA TCGGCTGGAG GTCGCCGGGC ACATCGCCGT GCTCGACCTC GTCGCGGTCG GCCGCGCCGG GCTCCTGCCC GCCGACGACC TGACGCTCGC CACCGCCCTC AAGACGCCGC TGGTCGGGCT CACCGACGAC GACCTCACCC GGATCTGTGC CCGCCGGCCG TTCTCCGAGA CGCTGGAGGA TGCGCTGACC CGCCACGCGG AGGCCGGCGA TGCGGCTGCG ATCCGCGGCC TGGCGGCGCT GCGGCTGTGG ATCCGCCTCG CGGCGGAGAA CGGCCCCTTC GGCTTCTACG CCGCCCTGCT CGGCCCGCAT GGCGGGCGCA GCCGGCTGGT GGCGCGGCTC GGCGGCGAGG CGGGCGACGC CATCGACGTG TTCCTCGCCC AGGCGGCCGA GGCCGAGACC GGGGGCGACG CCCCCTGCCT CGAAGCGTTC CTGGCCGATT ACGTGGTGCG GCCCGGCCGC GGCAGGAGCG GCCTCTCGGT CAAGCGCGAC CTGGAGGCCG GCCGCGACGA GGTGCGGGTG ATGACGGTGC ACGGCGCCAA GGGCCTGGAG GCCCCGGTCG TCGTCGTCAT CGACGGCTGC GAGCCGCTCG GCCGCAATGA TCCGCCGCTG CTCGGCCTCG ACCCCGCCGC CGACGGCCCG CTGCCGCCGG TCTGGACCGG GGGACGCACC CAGGATTGCG CGGCGACGCT GGCCGCCCGC TCCGCGCTCC AGGCGCGGGC GCGCGAGGAG CATAACCGCC TGCTCTACGT CGCCATGACC CGGGCCGCCG ACCACCTCGT CATCGCCCCC TATCGCGGGG CGACGCGGGA GACGCCGGCC TCATGGTGCG AGATGGTCCG CATCGGCCTG GAGCGGGGGT TGGGGCCCGG CGAGGCGATC GAGACCGAGC ACGGGCCGAT CACGATCTGG CGCGACGGCT CGGCCGCGTC GCTGGCCGCG GCGGCGGAGG CCACGGCCCT GCCGGAGCCC GAGGCGGTGC CGGACTGGCT GTTCTCGAAC GCCGCGCCGG AGGCCGAGGC GGCGCCCCCG CTGAGTCCCT CGGGCGCCCT CGGTGCCGCG GACGGGCAGC GCCAGCCGCA GCGCCGCCTG GGGGATGCCG AGGCGCGCCG CCGCGGTGCC CTGGTCCACG CGCTCCTCGA ACACCTGCCG CGGATCGAGC CGGCCCGCCG CGCCGAGGCT GCCGAGCGCT TCACCCGCGC CCGGGCGCCG GCCCTGGACG AGGGCAAGCG CACGGATCTC GTGCGCTCCG TGCTGCGGCT GATCGAGACG CCCGACCTCG CTCCGCTCTT CTCGGCGCAG GCACGGGCCG AGGTGGCGCT CTCGGGTCGG ATCGTGGTGG ACGGCGTGGA ACGCGATGTC ACCGGCCGGA TCGACCGGCT CGTCGTCGAG GACGGCCGGG TGATCCTGTG CGACTTCAAG ACCGGCCGCC CGCCCGCGGA CGACGCGCCG CTTCCCGAGC GCGAGGCGGC GCAGGTCGCC CTCTACGCCC GGCTCGCCGC AGCGATCTGG CCGGATCACG CGATCACCGC CCTGCTCGTC TGGACCTCGG GGCCGGTGGT GCGGCGGGTG GAGGGATCGC GGCTCGGGCT CTGA
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Protein sequence | MNAPLTGFTV DDLTKAAQRR AADPRLSAWV SANAGAGKTK VLTDRVLRLL LDGAPPGRIL CLTFTKAAAA NMSIRVFQRL GRWVTLDDAA LTAELIELTG ERPARDTLRL ARRLFARAVE TPGGLKIETL HALCERLLHM FPFEANVPAR FVVLDDNQSR EAFEIETDNV LADAFLGNDQ TLSDAFAVVG AEASGDTLRE AIRAAMRTRA LFSDHRALEP ALARLPRALA LADGASVATI ERAILEGSTL GDWRAVAGRL RTGKATDERL ADGLVEADAA LEAGKALAPY RSVFFTDKDE PRAAKSFGTK AVPEEVKQAL LDEQARLIPL FDSLRAARAL ARTQGLFRLA AEIHRRVEAQ KTRLGALDFD DLIHKTLDLL SRVGASWVLY KLDRGVDHVL VDEAQDTNPQ QWEILRTLTA EFAAGEGARG LTRTRFAVGD PKQSIYSFQG ADPREFELTR RAWERAAKGA ELDFADVSLR LSFRTASHVL AAVDAVFRVP EHFAGLSFEA GTPGTVHASA RAGVPGAVEL WGIEEPAEAE EPDAWAAPVD APEPNAPAIV TARRIARAVK AWTTRGDACG RVWRPGDVLI LVRKRSAAFE EVIRALKGLG VPVAGQDRLE VAGHIAVLDL VAVGRAGLLP ADDLTLATAL KTPLVGLTDD DLTRICARRP FSETLEDALT RHAEAGDAAA IRGLAALRLW IRLAAENGPF GFYAALLGPH GGRSRLVARL GGEAGDAIDV FLAQAAEAET GGDAPCLEAF LADYVVRPGR GRSGLSVKRD LEAGRDEVRV MTVHGAKGLE APVVVVIDGC EPLGRNDPPL LGLDPAADGP LPPVWTGGRT QDCAATLAAR SALQARAREE HNRLLYVAMT RAADHLVIAP YRGATRETPA SWCEMVRIGL ERGLGPGEAI ETEHGPITIW RDGSAASLAA AAEATALPEP EAVPDWLFSN AAPEAEAAPP LSPSGALGAA DGQRQPQRRL GDAEARRRGA LVHALLEHLP RIEPARRAEA AERFTRARAP ALDEGKRTDL VRSVLRLIET PDLAPLFSAQ ARAEVALSGR IVVDGVERDV TGRIDRLVVE DGRVILCDFK TGRPPADDAP LPEREAAQVA LYARLAAAIW PDHAITALLV WTSGPVVRRV EGSRLGL
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