| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_4733 |
|---|
| Symbol | |
|---|
| ID | 6314054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 5056540 |
|---|
| End bp | 5057898 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 642653412 |
|---|
| Product | pentapeptide repeat protein |
|---|
| Protein accession | YP_001927364 |
|---|
| Protein GI | 188583919 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1357] Uncharacterized low-complexity proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.832203 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.00416272 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGCGGAATG GCGGGGCGGG GGACGACGAT CCGCGCGTCG CGGCGCTGCT CGCGCGCCTC
TCGGACGGTG ACGCGCCGTT CTCGATCGGC GGGCGCGACG ACCTCGCCGG CCTGCCCCTC
GGGCGCGCGG CCCTGGGCGG GCGGGTCGAT CCGCAGGCGC CGCCGCGCTG GTGGGCCGCC
GCGGGCGGTC TCGACCTGCC GCGGGCCGAC CTCGCCGATG CGCGGCTGGA GGAGACGGAC
CTGTCCGGCG CCAATCTGCG GCAGGCCTCG CTGGCCGGGG CGCTCGCCCG CTCCGCCGGC
TTCGAGGGCG CCTGCCTGGA GGAGGCGGAC TTCTCCGGGG CCGACCTCAG CGGCGCCCGT
TTCGCCGGGG TCGCCGGGGG GCAGGCCGCC TTCCGCGAGG CGATGCTGGA GGATGCCGAC
TTCTCCGGTG CGACCATGCG CTTCGCCCGG CTCGACAAGG CGCTGCTCGA CGGCGCCCGC
TTCGAGGGCG CGGACCTGTG GGGCACCGAC TTCACCGGCG CGGATGCCGA CGATTCCGTC
TTCCGCGGCG CGCGGCTCGA CGAGGCCAAC CTCTCCGACT GCAACCTGAC CGGCGCGGAT
TTCGAGGGGG CGAGCCTGAA GAAGGCGCGG CTCGTCGGAT CGCGGCTGCG CGGCGCCAAC
TTCTCCGGTG CCCGGCTCGA CGGCGCGGAC CTGTCGGGCG CCGACTTCTC CCGCACCAGC
CTCGTGCGGC TCGACCTCAC CGCGTGCAAG CTGCGCCACG CGCGCTTCGC CGGCGCGTGG
TTGGAGGGCG TGCGGCTCTC CGTCGAGCAG ATCGGCGGCG CGGTCGGCGA GGAGATCGCG
GGCGAGTACG AGGCGGCGCA GGCGAGCTAT CTCGCCCTGG AGCGCAACCT TCAGAGCATC
GGCAGCCACG AGGGCGCGAG CTGGGCCTAC AAGCGCGGGC GCCGCATGGG CCGCCGCCAT
GCCGGGGTGC GGGCACGCGA GGCCTTTTTC ACCCGCGATC TTCGTGGAAC GTTCGGCTCC
GGCTACCGCT GGATCGCCGA CCGCTTCGTC GAGTGGCTGT GCGATTACGG CGAGAGCCTG
TCGCGGATCG CCCGCGCCTT CCTCGTCGGA ATCTTTCTGT TCGCCGGGGC TTACGGCGCC
ACGGGCGGGC TGTTCCACGA GGGCGAGAAC GTGCCGACCT ACAACCCCCT CGACCTCGTG
AGCTACAGCG CGCTCAACAT GATGACGGCC AACCCGCCGG AGATCGGCGT GAAGCCGCTG
GGGCGCGTCA CCAACCTGCT GGTCGGGCTC CAGGGCGCGG CGGGGATCGT GCTGATGGGC
TTGTTCGGCT TCGTCCTCGG CAACCGGCTG CGGCGCTGA
|
|---|
| Protein sequence | MRNGGAGDDD PRVAALLARL SDGDAPFSIG GRDDLAGLPL GRAALGGRVD PQAPPRWWAA
AGGLDLPRAD LADARLEETD LSGANLRQAS LAGALARSAG FEGACLEEAD FSGADLSGAR
FAGVAGGQAA FREAMLEDAD FSGATMRFAR LDKALLDGAR FEGADLWGTD FTGADADDSV
FRGARLDEAN LSDCNLTGAD FEGASLKKAR LVGSRLRGAN FSGARLDGAD LSGADFSRTS
LVRLDLTACK LRHARFAGAW LEGVRLSVEQ IGGAVGEEIA GEYEAAQASY LALERNLQSI
GSHEGASWAY KRGRRMGRRH AGVRAREAFF TRDLRGTFGS GYRWIADRFV EWLCDYGESL
SRIARAFLVG IFLFAGAYGA TGGLFHEGEN VPTYNPLDLV SYSALNMMTA NPPEIGVKPL
GRVTNLLVGL QGAAGIVLMG LFGFVLGNRL RR
|
|---|
| |