Gene Mpop_4724 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_4724 
Symbol 
ID6313589 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp5046783 
End bp5047811 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content69% 
IMG OID642653402 
Productcollagen triple helix repeat 
Protein accessionYP_001927355 
Protein GI188583910 
COG category 
COG ID 
TIGRFAM ID[TIGR01445] intein N-terminal splicing region 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.958299 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.038222 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTTAC CGATTACGTT CAACAACCAG ACTTACGGCG CTGGCTTTCT CGGCATCGAT 
GACGGAGGCG CATCCGCCGG CTTTTCGGTC GATGCTGCCT CCACGTACTC CGTTTCCGTC
AACGGAACCG TCAACGCGGT GGGCGACACG GTCACCCTGA CCTATGGCGC TGACGCGCCG
ACGGGCTATG CGGGTCGGTC CATTCAGCTG ACTTCGACGC AGTACGACAA CGCGAACCAG
ATCCTGTTCA CCAGCAGGGA CATCCCTCCC GGTGAAACCA GCGTGGGGAA CTACCGCTAC
CTTCTCTCGA ATACGCAGGT CTTCGGAAGC GGGAACCCCG CGCGGACGCG CTTCACGGCC
GACGACAACA ATCTCGGCAC CTACAACGCC CAGGCCGCGC CCTGCTTCAC CACCGGCACG
CTCATCCGCA CCGCCCGGGG CGAGGTCGCC GTCGAGGATC TGGTCGTCGG CGACCTCGCC
GTGACCGCCT CCGGCGCGCT GCGCCCGATC ACCTGGATCG GCCGCCGCGA CGTCGATGGC
CAAGGCCACG CCCTGTCCCA CGACCAGCAG CCCATCCGCA TCCGCGCGGG CGCCTTCGGG
CCCGGCCTCC CGGCGCGCGA CCTGCGCCTC TCGCACGGCC ATCCGGTTCT CGTCGGCGCC
GATGTCGACG GCGCGGGCGG AGCCCTGGTG CCGATCATGT GCCTGATCAA CGGCACCTCC
GTCGTCCGCG AGGCGGCGAC CCGCGTCACC TACTGGCATG TCGAGCTGGA CAGCCACGAT
ATCCTGCTGG CCGAGGGTCT GCCCGCCGAG AGCTTCTACG ACATGGGCAG CCGGGTCTGG
TTCGCGGGCG ATGACGGCGC GCTGACCGAT CCGGACTTCG TGCCGGCCGG CGAGCACGGC
CGCTGCCGCC CGGTGGCGGT GGATGGCAGC CTGATCGACC GGGAGCGGGC GCGGCTCGAC
GGCGTCTTCG CCGCGGAACT CGACGCGCAC GGCGCCTGGA CCGACACGCC GGCGTGGATC
GCCGCGTAA
 
Protein sequence
MALPITFNNQ TYGAGFLGID DGGASAGFSV DAASTYSVSV NGTVNAVGDT VTLTYGADAP 
TGYAGRSIQL TSTQYDNANQ ILFTSRDIPP GETSVGNYRY LLSNTQVFGS GNPARTRFTA
DDNNLGTYNA QAAPCFTTGT LIRTARGEVA VEDLVVGDLA VTASGALRPI TWIGRRDVDG
QGHALSHDQQ PIRIRAGAFG PGLPARDLRL SHGHPVLVGA DVDGAGGALV PIMCLINGTS
VVREAATRVT YWHVELDSHD ILLAEGLPAE SFYDMGSRVW FAGDDGALTD PDFVPAGEHG
RCRPVAVDGS LIDRERARLD GVFAAELDAH GAWTDTPAWI AA