| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_4108 |
|---|
| Symbol | |
|---|
| ID | 6311816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 4388112 |
|---|
| End bp | 4391399 |
|---|
| Gene Length | 3288 bp |
|---|
| Protein Length | 1095 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642652801 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001926759 |
|---|
| Protein GI | 188583314 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCGC GGATGCGCGC CCACGATTGG GCGTCGACGT TCCTCGGGCC GGCGGACCGG
TGGCCGCAAG CCTTCGTGAC GCTGTTGCGA GTGATGCTCA GCTCGCGCCA GCCGATGTTC
CTGTGCTGGG GTCCCGAGCG TACGCTCGTC TACAACGACG CCTACGCCCC CATGCTCGGC
GCCCGGCATC CCGATGCCCT CGGTCGCCCG TTCTTCGATG TCTGGCCCGA GGTCCGCATC
GAGGTCGGGG TCCTGATGGA TCGGGTGTAT GCCGGCGACC CGGTGCACAT GGACGACCTC
CAGCTCACCT TGCACAGGAA CGGCTACCCC GAGGAAACGC ACTTCTCGTT CTCCTACACG
CCCGTCCCGG ACGACAGAAA CACGGTCGCG GGGCTGTTCT GTGCCTGTAC CGAGATCACC
AAGCAGGTCC TGGCCGAGCG CCGCCTGTCG GCCGAGCGCG AGCGCTTCGC CAGCCTCTTC
GAGCAGACCC CGACGTTCAT GACCGTGCTG CGCGGCAGGG AGCATCGGTT CGAACTGGCC
AATCCCCGCT ACCTGAAGCT CGTCGGCCAC CGGGACGTCG TAGGCAGGAC GGTCGCGGAA
GCCCTGCCCG ACGCGGTCGA GCAAGGGTTC CTGGAAATTC TCGACCAGGT CTACGACAGC
GGCGTGCCGC AGACGTTCCA TGGCATCCGC TACGCCGTGC AGGCGGTGCC GGGCGGCCCG
CATGACGAGC GCTTCGTCGA CGTCGTCTAC CAACCGATCC GGGATGTCGA CGGTACGGTC
GGGGGTATCT TCATCGAGGG CGCGGACGTC ACCGACCGTG CGCGGGCGGA GACGCGGCGC
GAGGCGCTGG TGCGGATCAC CGACCGGTTC AATGAGCTCA CGAGGGCGGA CGACATCGCT
TTCGCGGCCT CGCAGGTCCT CGGCGAGACG TTGGCGGTCA GCCGTGTGGG ATACGGCACC
ATCGACCCCG ACGCCGAGAC GCTCCACGTC GAGCGCGACT GGAACGCACC GGGCGTCGAG
ACCCTCGCCG GCGTCGTGCC GCTGCGGACC TACGGGTCGT TCATCGACAG CCTGAAGCGC
GGCGAGTTCG TCAGCATCGC GGACGTCGAG CGCGACGATA GGACGGCGGG CGCGGCGGAG
GCCTCGAAGG GGCGCGGCGC GCACGCCTTC GTCAACGTGC CGGTGCTCGA ACAGGGTCGG
CTCGTGGCCG CCCTCTTCGT CAACCATGCC GAGGTGCGGG ACTGGGCGCC GGACGACCTG
GCCTTCATCC GGGAAGTCGC GGGCAGGACC CGCATCGCGG TTGAGCGGAG CCGTGTCGAG
ACGGCCTTGC GCGACCTCAA CGCCGACCTC GAACGGCAGG TCGCCGAACG GTCACGCGAG
TTGAGCCGGA CTTGGCAGGT CTCCACGGAC CTCCTGGGCA TCGCCGACGA CGCCGGATTC
TTCGTCCGGA CCAACCCGGC CTGGAAGTCG CTGCTGGGCT GGAGCGATGC GGAGGCCGCA
CGCATCCCCT TCGTCGAGCT GGTCCACCCC GACGACGTCA GGGCCACCCA CGCCGCGCTG
GATCGGCTAC GGGCCGGGGA GGCGGTCCTC CGCTTCGAGA ACCGCTGCCG CACCACCGCC
GGTGGGTACC GCTGGCTAGC CTGGGTCGCG GTCCCCGAGG GCGGGCAATT CTACTGCAGC
GCGCGGGACG TGACGGAGGA GAGGGAGCAT GCCGCGACCC TCGCCGAGCG TACCGCCGAG
CGCGACCGGC TCTGGAACCT GTCCGAGGAC ATGCTGGCCC GCGCCAACTA CCAGGGGACG
ATGTCGGCGG TGAGTCCTGC CTGGACCCAG GTGCTAGGCT GGTCCGAGGC CGAGCTCCTG
TCGCGGCCCT ACGCGACCTT CATGCATCCC GACGACACGG ACCAGACGCT TGCGGCCCTC
GTCCGGATGG GCGACACGAA GCGGCCAACC CGGTTCGAGA ACCGCATCGC CGCGAGCGAC
GGGTCGTGGA AGTCCATCGA ATGGACCGTG GCGCCCGAGC CGGACGGGCT GCACTTCATC
GCCGTCGGTC GCGACCTGAG CGTGGCGAAG GCGCGCGAGG CGGAACTCGC GGCGGCTCAG
GAAGCCCTGA GGCAATCGCA GAAGATGGAG GCGGTCGGAC AGTTGACCGG CGGCTTGGCG
CACGACTTCA ACAACCTGCT CGCCGGCATC TCCGGCTCGC TGGAACTGAT GCAGACCCGG
ATGCAACAGG GACGGCTCAG CGATGTCGAC CGCTACATGG CGGCCGCGCA GGGCGCCTCG
AAGCGCGCGG CCGCCCTGAC CCACCGCCTG CTCGCCTTCT CGCGCCGCCA GACCCTGGCC
CCCAAGCCCA CCGACGTGAA CCGCCTCGTC TCCGGCATGC AGGAATTGAT CCAGCGTACG
GTCGGCCCGG CCATTCCCGT GGAGGTCGTC GGCGCATCCG GGCTGTGGCC TGCGCTGGTG
GACCCACCGC AGCTTGAGAA CGCGCTGCTC AACCTGTGCA TCAACGCGCG TGACGCGATG
CCGGACGGCG GGCGCATCAC GGTCGAGACC GCCAACAAAT GGCTCGACGA GCGGGCCGCA
CGCCAGCATG ACATGCCCGA GGGGCAGTAC CTCTCCCTCT GCGTCACCGA CACCGGTACC
GGCATGCCGC CGGACGTCGT CGCGCGGGTG TTCGAGCCGT TCTTCACCAC CAAGCCGCTG
GGCGAGGGCA CTGGACTCGG CCTCTCGATG ATCTACGGCT TCGCCCAGCA GTCCGGCGGG
CAGGTGCGTA TCTACTCGGA AGTCGGCAGG GGCACGACCG TGTGCGTCTA CCTTCCGCGC
CACTACGGCG AGATCGCCGA GGACACGGGT GACGAAGTCG CGACGACGCT ACCCCGCTCC
GAGCAGGGCG AGACCGTCCT CGTCGTGGAC GACGAGCCGA CGGTCCGCAT GCTGGTCAAC
GACATCCTGG AGGATCTCGG CTACACCGCC ATCGAGGCCG CCGACAGCGC CGCGGGCCTC
AAGGTGCTGC AGTCGGACGT CCGTATCGAC CTTCTGGTGA CGGACGTGGG GCTGCCAGGC
GGCATGAACG GCCGGCAGAT GGCCGATGCC GGCCGCGTCA CCCGTCCCGA CCTCAAGGTG
CTGTTCATCA CCGGATACGC CGAGAATTCC ATTCTCGGGA ACGGCCATCT CGCACCGGGC
ATGGCGGTCC TGACCAAGCC CTTCGCCGTC GACACGATGT CTGCCCGCAT CCGCTCCATG
ATCGAGGCGT CGGATGCAGG GCCGCTCGGG CGACGCCTGG TTCCCTAG
|
|---|
| Protein sequence | MGARMRAHDW ASTFLGPADR WPQAFVTLLR VMLSSRQPMF LCWGPERTLV YNDAYAPMLG
ARHPDALGRP FFDVWPEVRI EVGVLMDRVY AGDPVHMDDL QLTLHRNGYP EETHFSFSYT
PVPDDRNTVA GLFCACTEIT KQVLAERRLS AERERFASLF EQTPTFMTVL RGREHRFELA
NPRYLKLVGH RDVVGRTVAE ALPDAVEQGF LEILDQVYDS GVPQTFHGIR YAVQAVPGGP
HDERFVDVVY QPIRDVDGTV GGIFIEGADV TDRARAETRR EALVRITDRF NELTRADDIA
FAASQVLGET LAVSRVGYGT IDPDAETLHV ERDWNAPGVE TLAGVVPLRT YGSFIDSLKR
GEFVSIADVE RDDRTAGAAE ASKGRGAHAF VNVPVLEQGR LVAALFVNHA EVRDWAPDDL
AFIREVAGRT RIAVERSRVE TALRDLNADL ERQVAERSRE LSRTWQVSTD LLGIADDAGF
FVRTNPAWKS LLGWSDAEAA RIPFVELVHP DDVRATHAAL DRLRAGEAVL RFENRCRTTA
GGYRWLAWVA VPEGGQFYCS ARDVTEEREH AATLAERTAE RDRLWNLSED MLARANYQGT
MSAVSPAWTQ VLGWSEAELL SRPYATFMHP DDTDQTLAAL VRMGDTKRPT RFENRIAASD
GSWKSIEWTV APEPDGLHFI AVGRDLSVAK AREAELAAAQ EALRQSQKME AVGQLTGGLA
HDFNNLLAGI SGSLELMQTR MQQGRLSDVD RYMAAAQGAS KRAAALTHRL LAFSRRQTLA
PKPTDVNRLV SGMQELIQRT VGPAIPVEVV GASGLWPALV DPPQLENALL NLCINARDAM
PDGGRITVET ANKWLDERAA RQHDMPEGQY LSLCVTDTGT GMPPDVVARV FEPFFTTKPL
GEGTGLGLSM IYGFAQQSGG QVRIYSEVGR GTTVCVYLPR HYGEIAEDTG DEVATTLPRS
EQGETVLVVD DEPTVRMLVN DILEDLGYTA IEAADSAAGL KVLQSDVRID LLVTDVGLPG
GMNGRQMADA GRVTRPDLKV LFITGYAENS ILGNGHLAPG MAVLTKPFAV DTMSARIRSM
IEASDAGPLG RRLVP
|
|---|
| |