| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_4029 |
|---|
| Symbol | |
|---|
| ID | 6312009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 4304307 |
|---|
| End bp | 4305479 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642652727 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001926686 |
|---|
| Protein GI | 188583241 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.36488 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.88934 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTCT CCCGAACCGC GAACATCGAG GGCGAGTTTG CAAGCCTCAA CCAGTTGCGG
TTCTCACCCC CCATCGAGGA GCGCTTCGAG ACGGAGGGCC TGCCTGAGCG CATCAGGCTC
GCCCAGGCGA CGCTGTTCGC CGCCATCCTT CTCTACAATA TCTACTCCGT GGCCGACTGG
ATGATCCTGC CGGATGTGCT CGGCCCGCTC GCCGTGATGC GCCTGGGCGT CTACACGCCG
CTGACCCTGC TGACGATCTG GATCCTGCCG CGGCGGACAC GGACCTGGCA GGTCGACGGG
ATGCTGGTGG GGGGCTGTTT CCTCTCGGTG CTGATGCCGT CCGCGATCAT CTCGTTCAGC
GCGTCGCACT ACGTCGCGAC CTACCAGCTC GGCGCCATGC TCGTCATCGT CTACATGGTC
CTGGCGCAGC GGGTCCGGTT CCGGATGGCG GTGATCGGGA TGGTGCTGAT CGTCGTGACC
CAGATCACAA CCGTCGCGCA CCGGCCCGAG GTCGATGCCC CGACCTTCTG GTACATCGTG
GTGTTCTACC TCATCGCCGC GGCCATCATC CTCCTAGGAT CGTTCGTGCT GGAGCGGACG
GAGCGCTACG GCTTTCTCCA GCGCCTCCGG GTCGAAGCGA TGATCGAGCA CAACGCGGAG
ATGGCCCGGA CCGACCAACT GACGGGCCTG TTCAACCGGC ACCATCTCGC GACCATCGGC
GTCGATCTCA TCCCCAAGAA CGACAGGGAG CCTCTCGGGG CGCTCCTGAT CGACATCGAC
CACTTCAAGC GGTTCAACGA CACCCAGGGC CATCTGGCGG GCGACCGGTG CATCCGCACC
GTCAGCGATC TGGTGCGCGA GATGCTGATC CCGGCCAACG AGAACACCCC CCCGGTGGGA
ACGGCCGTCC GCTTCGGAGG CGAGGAGATC CTCGTGCTGC TGCCGGGCAT GGATGCGGCG
CAGGCCGCCG CCCTCGGGGA CGCCATCCGT CGACGCGTGG AAGGCGTCGG GATTCCCCAT
CCCGGCCTCG GGCCGACGGC CGTGGTGACG CTGTCGATCG GCGTCGCCGC CTGGAAGAAG
GGCCATAAGG AGCTGGACAC GCTCGTGAAC GCCGCCGATG CCGCCCTCTA TCAAGCGAAG
AATCTCGGCC GCAACCGGGT GGCGGTGGCC TGA
|
|---|
| Protein sequence | MSLSRTANIE GEFASLNQLR FSPPIEERFE TEGLPERIRL AQATLFAAIL LYNIYSVADW
MILPDVLGPL AVMRLGVYTP LTLLTIWILP RRTRTWQVDG MLVGGCFLSV LMPSAIISFS
ASHYVATYQL GAMLVIVYMV LAQRVRFRMA VIGMVLIVVT QITTVAHRPE VDAPTFWYIV
VFYLIAAAII LLGSFVLERT ERYGFLQRLR VEAMIEHNAE MARTDQLTGL FNRHHLATIG
VDLIPKNDRE PLGALLIDID HFKRFNDTQG HLAGDRCIRT VSDLVREMLI PANENTPPVG
TAVRFGGEEI LVLLPGMDAA QAAALGDAIR RRVEGVGIPH PGLGPTAVVT LSIGVAAWKK
GHKELDTLVN AADAALYQAK NLGRNRVAVA
|
|---|
| |