| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_3939 |
|---|
| Symbol | |
|---|
| ID | 6312207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 4191883 |
|---|
| End bp | 4193640 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 642652641 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001926601 |
|---|
| Protein GI | 188583156 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0606256 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAGG ACCGGAGCGC GGAGCGCCCT TGGCTGGCCG CCTATCCCCC CGGTATTCCC
GCCGATATCG ACGTCGACGC GGTCGGCACG GTGGTCGATC TGTTCGACCG CAGCGTGCTG
CGCTTCGCCG AGCGCCCGGC CATCACCTGC TTCGGCGCGA GCCTGCGCTA CCGCGAGGTC
GGCGCCGCCG CGCAGGCCGT GGCGGCGTGG CTCGCCGCCA GCGGCTACGG CAAGGCGCGC
TCCAAGACGA GCGGGCAGGG GGATGCGAAG GAGGACGGGG TCGGCGACCG TGTCGCGGTG
ATGATGCCCA ATGTCCCGGC CTGTCCGGTC GCGCTGCTCG GCGTGCTGGT GGCGGGCTGC
ACCGCCGTCA ACGTCAACCC GCTCTACACC CCGCGGGAAC TCGCCGCGCA GATCAACGAT
TCCGGCGCCC GCGTTCTCTT CGTGCTGGAG AACTTCTGCC ACACGGTCGC GCAGGCGCTG
CCGCAGATGC CGGGCCTGGA GCGGATCGTC GTGGCGGGGC CCGGCGACCT GCTCGGGCTG
AAGGGCCGGG TCGTCGATTT CGTATCGCGG CGGGTGAAGC GGGCGGTGCC GCCCTATGCC
CTTCCGGCCG GGCGGACCCT GCGGTTCGAG GCGGTGGTGC GGGCCGGCCG CGGCCTCAAG
CGCCCCTCGG TCGCGATCGA GCCCGGCGAC GTCGCCTTCC TGCAATATAC CGGCGGCACC
ACCGGCATCG CCAAGGCGGC GATGCTGACG CATCGGAACA TCATGGCCAA TATCGAGCAG
AGCCGGGCCT GGTTCCGCGC CTCCGCCGAG GAGGGGGACG GGCGCGTGGC GGTGACGGCG
CTGCCGCTCT ACCACATCTT CGCGCTGACC GCCTGCTTCC TATTCTTCTT CCGGCTCGGC
GGCTGCTGCC TCCTGATCCC CAACCCGCGC GACCTCGACG GCTTCGTGAA GACCTTGAGC
CGCACCCGGT TCACCAACTT CGCGGGGGTC AACACGCTGT TCAACGCGCT GAACAACCAC
CCGAAGATCG GCACGGTCGA TTTCTCGCGG GTCGAGTACG TGGTCGGCGG CGGCATGGCG
GTGCAGTCGG CGGTCGCCGC CCGCTGGAAG GCGATCACCG GCCAGACCAT CCTCGAAGGC
TACGGCCTGT CGGAGACCTC GCCGGTGGTG AGCGTCAACC CGCTCGGGCT CGCCGACTGG
ACCGGGACGA TCGGCTATCC CTTGCCGTCG ACCGAGGTGA CGATCCGCGC CGAGGACGGC
ACGGTGCTGC CCTTCGGCGT GCCGGGGGAA CTCTGCGTGC GCGGCCCCCA GGTGATGACC
GGCTACTGGA ACCGGCCCGA GGAGACGCGG GCGTCCATGA CCGCCGACGG CTTCTTCCGC
ACCGGGGACG TGGCGGTGAT GACGCCGGAC GGCCAGATCC GCATCGTCGA CCGGATGAAG
GACATGATCC TCGTCTCCGG CTTCAACGTC TATCCCAACG AGGTCGAGGA CGTGCTCGCC
ACCCATCCGG CGGTGGTCGA GTGCGCGGTG GTTGGCGCCC CCTGCGGCGA CAGCGGCGAG
ATGGTCGTCG CCCATGTGGT GCTGCGGGAC CGGTCGGTGG ATGCGGACGC GCTACGGACC
CATGCCCGCG CGAGCCTCAC CGGCTACAAG GTGCCCCGCC GGATCGTGAT CCAGGACAGC
CTGCCGAAGA CCAATGTCGG CAAGGTGCTG CGCCGCGCGC TGCGGGAGGA GGGGGTGAGC
ACCTTGCCGC CGGGATAG
|
|---|
| Protein sequence | MAQDRSAERP WLAAYPPGIP ADIDVDAVGT VVDLFDRSVL RFAERPAITC FGASLRYREV
GAAAQAVAAW LAASGYGKAR SKTSGQGDAK EDGVGDRVAV MMPNVPACPV ALLGVLVAGC
TAVNVNPLYT PRELAAQIND SGARVLFVLE NFCHTVAQAL PQMPGLERIV VAGPGDLLGL
KGRVVDFVSR RVKRAVPPYA LPAGRTLRFE AVVRAGRGLK RPSVAIEPGD VAFLQYTGGT
TGIAKAAMLT HRNIMANIEQ SRAWFRASAE EGDGRVAVTA LPLYHIFALT ACFLFFFRLG
GCCLLIPNPR DLDGFVKTLS RTRFTNFAGV NTLFNALNNH PKIGTVDFSR VEYVVGGGMA
VQSAVAARWK AITGQTILEG YGLSETSPVV SVNPLGLADW TGTIGYPLPS TEVTIRAEDG
TVLPFGVPGE LCVRGPQVMT GYWNRPEETR ASMTADGFFR TGDVAVMTPD GQIRIVDRMK
DMILVSGFNV YPNEVEDVLA THPAVVECAV VGAPCGDSGE MVVAHVVLRD RSVDADALRT
HARASLTGYK VPRRIVIQDS LPKTNVGKVL RRALREEGVS TLPPG
|
|---|
| |