| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_3928 |
|---|
| Symbol | |
|---|
| ID | 6312225 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 4181292 |
|---|
| End bp | 4182008 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 642652630 |
|---|
| Product | LrgB family protein |
|---|
| Protein accession | YP_001926590 |
|---|
| Protein GI | 188583145 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1346] Putative effector of murein hydrolase |
|---|
| TIGRFAM ID | [TIGR00659] conserved hypothetical protein TIGR00659 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.337837 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGCG AGTTCGCCCT CTGGGTCTAT CTCAGCCACA CGCCGCTGCT GTGGCTCACC
GTGACGCTAC TGGCCTACGC GGTGGCCGAC CGCCTGTTTC AGGCGGCGGG GCGCCATCCC
GTTGCAAACC CGGTGGTCCA TTCGATCTGG ATGATCGGCC TCGTGCTGAC GCTGACCGGC
ACGCCCTACC GCGCCTATTT CGAGGGCGCG CAGTTCGTGC ACTTCCTCCT CGGCCCCGCG
ACCGTGGCGC TCGCGGTGCC GCTCTACGAG CGCCGGGCGA CGGTGATGCG CGCGCTCCTA
CCGATGGGGG CGGCCCTCAT CGTCGGCTGC GTCACCGCGA TGACCTCGGC CATCGTCTTC
GCCCGGCTCG CCGGCATCCC CTACGACGTG ATGCTGGCCA TGACCCCGAA ATCCGTGACG
ACCGGCGTCG CCATGGGCAT CGTCGAGGCG CTCGGCGGCG ACCCGACGCT GGCCGCCGTG
CTGGTGATGC TCACCGGCAT GGCCGGGGCG GTGATCGTCA CGCCGTTGAT GCGGACCCTG
CGCATCGAGG ACATGCGCGC CCGCGGCTTC GCGGCGGGGC TCGCCGCCCA CGGGCTCGGC
ACGGCCCGCG CCTTCCAGGT CAGCGAGGTC GCCGGCACCT TCGCCGGCAT CGCCATGGGG
CTCAACGCCT TCCTGACCGC GATCCTGGTG CCGGTGGCGG TGAGCTTCCT GCGGTGA
|
|---|
| Protein sequence | MTGEFALWVY LSHTPLLWLT VTLLAYAVAD RLFQAAGRHP VANPVVHSIW MIGLVLTLTG
TPYRAYFEGA QFVHFLLGPA TVALAVPLYE RRATVMRALL PMGAALIVGC VTAMTSAIVF
ARLAGIPYDV MLAMTPKSVT TGVAMGIVEA LGGDPTLAAV LVMLTGMAGA VIVTPLMRTL
RIEDMRARGF AAGLAAHGLG TARAFQVSEV AGTFAGIAMG LNAFLTAILV PVAVSFLR
|
|---|
| |