| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_3538 |
|---|
| Symbol | |
|---|
| ID | 6311525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 3772032 |
|---|
| End bp | 3773723 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 642652260 |
|---|
| Product | lipopolysaccharide biosynthesis protein |
|---|
| Protein accession | YP_001926222 |
|---|
| Protein GI | 188582777 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG0489] ATPases involved in chromosome partitioning |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.274644 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTACA GCTCCATGAT CGTCCGCCCG GACGATCCGC ATGACGGCCC GCGTCCCGGG
TTCGAAACGG CGGATCCCGG CCCGCTCGGG CACGATCCCG AGACGACGCT GATCGGCGAC
CTGATCGCGG CCGTCCGGCG GCAGGCCCTG GCCCTCGCGC TGTGGGTCCT GCTCTGTACG
GCCGCCGGCG TCGCCTACGT GCTGATCGCC CAGCCCGAAT TCGTGGCGGC GGCCCAGATC
GCGCTCGAAC CGCGGGTGCG CCTGCCGCCG GGCGCCGACG CGGCGGCGGC CGCCGCCGCC
ACGGCTCCGA CCCTCGACAG CGCCCAGGCG GAGAGCCAGG TGCAGGTCAT CCGCTCGGCG
CGCAACCTGC GCTACGTGTT CGACACCCTC GGTCTCGACA AGGATCCGGC CTACGCGGCC
AAGGGACCGG GCCTCGTCAG CCGGACCCTC GCCCGGATCT CGGGCCTGCT TCCCTTCCTG
GCCGCGCCGC CCCTCTCGCC GGAGGAGGAG GCGATGCGCG CCCGCGAAAT CGCCTTCCAG
AACTTCTCCG ACCGGATCCA GGTCAAGCGG CTCGGGCAGT CCTACGTTCT CGAAGTGTCC
TTCCGGGGGC TGACGCCGCA GGATGCCGCC CGCCTGACGA ACGCGATCGC GGCCGCCTAT
ATCCGCGACC AAGTGCTCGT CCGCGCCGCC TCGGATCAGC GCGGCAGCGA GTTTTTGCAG
GGCCGAATCG CCCTGATCCA GGCCCAGAAG AAAGCCGCCG ACGAGGCGGT CGCCACGGGC
GTGATCACCG ACTTCCAGTT CCCGGATTCG GATGCCCGCA TCGTCGGCGC GGCCCTGCGG
CCGCTCGCGG CCGCCTATCC GCAGACCAAG CTGATCCTCC TGCTCGGGGC GCTTTTCGGC
CTCGTCAGCG GCATCGGCTG CATCGCGGTC CTGCACAGCT TCGACCGCAC CGTGCGCTCG
CCGGCCCAGA TCCGCCGCAT GCTCGGCGTC GACAGCTTCG TCGTCCCGCG CTTCAAGGGC
GGGCGCCTGA CGGAGACCAC CGCCCTCGAC CGGCCGGATT CCGACTTCGC GCTCGCGCTG
CGCCGCCTGC GCACCGTCCT CTTCGCCGTG GGCGGCGAGG CCCGCTACAT CACGGTCGGC
CTCGTCTCAT GCCGGACGGA CGAGGGCTGC AGCACCCTCA GCGCCAATCT CGCCGGCCTG
CTCTCCACAT CGAGCGACCG GGTGGTGCTC GTGGATGCCG ACCTGCGCGA CCCCGAACTC
ACCCGCCGCT TCGCACCGAA AGCGACCGCC GGGCTCGAAA GCCTCGTGCT CTCACCCGTC
ATCGGCGCGG ACCTGCCCGA AGTCGCCCTC GCCGGCACGC TCAGCTTCGT GCCCGCCGTG
GCGGCCGGGC GGACGGCCAA CCCCAACGCC TTTCTCGGGG CGCATGCGAT GCGCGCCGCG
CTGGCGCGGG TCAACGGCAA GCGGGATCTC GTCCTCGACC TGCCGCCGCT CGATGCCTCC
TCCGACGCTC AGGCGATCGG ACACATGCTC ACCGGCATCG TCCTCGTCGC CAGCCTGAAC
CGGACGAAGC TCGACGAGCT CTCGGATGCG ATCCGCGCCC TCCGGTCGAC CGATTGCCGC
GTCCTGGGGA TTGTCCTCAA CGATCCGGCG CCATCCCGCA AAGCCAGGAG GCAGGCCAGT
GCATCAGCCT AG
|
|---|
| Protein sequence | MNYSSMIVRP DDPHDGPRPG FETADPGPLG HDPETTLIGD LIAAVRRQAL ALALWVLLCT
AAGVAYVLIA QPEFVAAAQI ALEPRVRLPP GADAAAAAAA TAPTLDSAQA ESQVQVIRSA
RNLRYVFDTL GLDKDPAYAA KGPGLVSRTL ARISGLLPFL AAPPLSPEEE AMRAREIAFQ
NFSDRIQVKR LGQSYVLEVS FRGLTPQDAA RLTNAIAAAY IRDQVLVRAA SDQRGSEFLQ
GRIALIQAQK KAADEAVATG VITDFQFPDS DARIVGAALR PLAAAYPQTK LILLLGALFG
LVSGIGCIAV LHSFDRTVRS PAQIRRMLGV DSFVVPRFKG GRLTETTALD RPDSDFALAL
RRLRTVLFAV GGEARYITVG LVSCRTDEGC STLSANLAGL LSTSSDRVVL VDADLRDPEL
TRRFAPKATA GLESLVLSPV IGADLPEVAL AGTLSFVPAV AAGRTANPNA FLGAHAMRAA
LARVNGKRDL VLDLPPLDAS SDAQAIGHML TGIVLVASLN RTKLDELSDA IRALRSTDCR
VLGIVLNDPA PSRKARRQAS ASA
|
|---|
| |