| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_3417 |
|---|
| Symbol | |
|---|
| ID | 6311422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 3642892 |
|---|
| End bp | 3645579 |
|---|
| Gene Length | 2688 bp |
|---|
| Protein Length | 895 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 642652141 |
|---|
| Product | Nitrate reductase |
|---|
| Protein accession | YP_001926103 |
|---|
| Protein GI | 188582658 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG2906] Bacterioferritin-associated ferredoxin
[COG3383] Uncharacterized anaerobic dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCAGC CCGCCTCCGA TCTCGCCGCC GCCGCGGTGA AGACGACGTG CCCCTATTGC
GGCGTCGGCT GCGGCGTGCT CGCGACACCG GACGGGCAGG GCGGTGTCGC GATCGCGGGC
GATCCCGAGC ATCCGGCGAA TTTCGGCCGC CTCTGCTCCA AGGGTTCGGC ACTGGGCGAG
ACCGTCGATC TGGGCGATCG GCTGCTCTCG CCGAGGGTGG ACGGGCAGAC CGTGTCGTGG
GAGGGCGCGC TCGGCACCGT GGCCGGCGGC TTCCGGCGCA TCGCCGAGCA GCACGGGCCG
GATTCGATCG CCTTCTACCT CTCTGGCCAG ATCCTGACCG AGGATTACTA CGTCGCCAAC
AAGCTGGCGA AGGGCTTCCT GGGCACGCCC CACGTCGACA CCAATTCGCG GCTGTGCATG
TCCTCGGCGG TCGCGGCCCA CCGCCGCGCC TTCGGCTCCG ACACGGTGCC CGGCTGCTAC
GAGGATCTCG ACGAGGCCGA CCTGATCGTG CTCGTCGGTT CCAACGCCGC GTGGTGCCAC
CCGATCCTGT TCCGGCGGAT GATGGATGCC CGCAAAAACC GCGGCACCAA GATCGTCACC
ATCGATCCCC GCCGCACCCA GACCGGCGAG GAAGCGGACC TCCATCTCGG GCTTCAGCCC
GGCACCGACA CCGCCCTGTT CTCCGGCCTG CTGGTGCATC TGGCCGGCAC GGCCAAGCTC
GACCTGCGCT TCATCGAGGA GCACACTGCC GGCCTCGAGG GCGCCCTGGA GCGTGCCCGC
CAGATCGCCC CGGACACCGC CGCCACCGCC CGTGCCACCG GCCTCGCGGA GGCCGAGGTG
CAGGCCTTCT TCGACCTGTT CGCGCGGACG AAGCGGGTCG TCACCGGCTT CAGCCAGGGC
GTGAACCAGT CGGCGCAGGG CACCGACAAG GGCAACGCCA TCATCAACTG CCACCTCGCC
ACCGGGCGGA TCGGCCAGCC CGGCATGGGC CCGCTCTCGC TCACCGGCCA GCCCAACGCC
ATGGGCGGGC GCGAGGTCGG GGGCTTGGCC AACATGCTGG CCGCCCACAT GCACTTCGCC
CCCGAGGAGG TGGACCGGGT CCGCCGCTTC TGGAAGGCGC CCAACATCAT CACCGGCGAG
GGCATGAAGG CGGTCGCGCT GTTCGAGGCA ATCGAGCGGG GGAAGATCAA GGCGCTCTGG
GTGATCGGCA CCAACCCGCT CGTCTCGATG CCGCGCGCCG ACCAGATCCG CAAGGCGATC
GAGGGGCTCG ACCTCTACGT CGTCTCGGAG GCAGTCGCGA CCAGCGACAG CGCCCGCGCC
ACCGCGAAGA AGACCGTGCT GCTGCCGGCC CTCGCCTGGG GCGAGAAGGA CGGCACGGTG
ACCAATTCCG AGCGCCGCAT CTCGCGCCAG CGCGCCTTCC TGAAGGCGCC GGGCGAGGCG
CGGGCCGATT GGGCGATCCT GTGCGACGTC GCCCGCCGCC TCGGCCACGG CGAGGCCTTC
GCCTATCGCT CGGCGGCCGA GATCTTCCGC GAGCACGCCG CCCTCTCGGC TTTCGAGAAC
GAGGGCACCC GCGACTTCGA CCTCGGCGGC CTCGCCGAGA TGAGCGCGCT TGCCTACGAC
GCGCATCTGC CGCTGCAATG GCCGGTGCCC AAGCGCGGCC CCGACGCGCG CAAGGGCCGT
GCCCGGCTCT TCTCCGACGG GCGCTTCTAC ACCTTCGATC AACGGGCACG CTTCGTCGCG
GTGCAGCCGC CGGCGCTCGC CCAGCCCGTG ACCGAGGCGC GTCCGCTCGT GCTCAACACC
GGCCGCATCC GCGACCACTG GCACACGATG ACCCGCACCG GCAAAAGTCA GCGCCTCTCG
GCGCACCGCG CCGTGCCCTT CGTCGAGGTC CACCCCGACG ACGCGACGCG TTTCGGTCTG
AGCGACGGCG GATTTGCTCG CGTCACCACC GATCTCGGCC AAGCGATCCT CGAAGTGACG
GTGACGGACG ATGTCCTGCC GGGGTCGGTC TTCGTGCCGA TGCACTGGAG CGACATGACC
GCCTCGGACG GGCGTGCCGC GGCACTCGCC CGCGGCATCA CCGATCCGGT CTCGGGCCAG
CCCGAACTGA AGGCGACACC CGCCTCGGTC GAGGCTGTGG CCTACCGCTC CCGCGGCTAC
CTGCTGACGC GGGAGGCCCA TGCCGCCCCG GCCGGCTGGT GGTGGGCGCG GGCGACGGTC
TCCGGCGGCT CCGGCCTGCT GTTTGCCACG GGGGAGGGCT CGCGGGAGAT GGCCTTGGCG
ATCCGCGGGA TGTTCCCCGG CCACGAGCTG GCGGAATACG TCGATCACGC CCGCGGCCTC
TACCGCTGCG CCGTCTATCG CGAGGACCGG CTCGTCGCCG CGCTCAGCGT GGCGCCGGGC
GACCGGCGGC CGGACTGGGA GATCGCCAAA GGTATCTTCG CCAGCCCCGA CATCGAAGCG
ATCGATCGGC GCGCCCTGCT CTCGGGCCGG GCGGCGACGG CTTCGGCCGG GCCGGTGGTC
TGCGCCTGCC ACGGCGTCGG GCTCGACGTC ATCACCGCCG CCATCGCCGC GGGGGCCGGT
TCGGTGGAGG CGGTAGGGGC GGCCTGCAAG GCGGGGACGA ATTGCGGCTC GTGCATCCCC
GAGATCCGCA AGCTGCTGTC GCCGACGCTT GCGCGCAGCG CCGCGTAG
|
|---|
| Protein sequence | MSQPASDLAA AAVKTTCPYC GVGCGVLATP DGQGGVAIAG DPEHPANFGR LCSKGSALGE
TVDLGDRLLS PRVDGQTVSW EGALGTVAGG FRRIAEQHGP DSIAFYLSGQ ILTEDYYVAN
KLAKGFLGTP HVDTNSRLCM SSAVAAHRRA FGSDTVPGCY EDLDEADLIV LVGSNAAWCH
PILFRRMMDA RKNRGTKIVT IDPRRTQTGE EADLHLGLQP GTDTALFSGL LVHLAGTAKL
DLRFIEEHTA GLEGALERAR QIAPDTAATA RATGLAEAEV QAFFDLFART KRVVTGFSQG
VNQSAQGTDK GNAIINCHLA TGRIGQPGMG PLSLTGQPNA MGGREVGGLA NMLAAHMHFA
PEEVDRVRRF WKAPNIITGE GMKAVALFEA IERGKIKALW VIGTNPLVSM PRADQIRKAI
EGLDLYVVSE AVATSDSARA TAKKTVLLPA LAWGEKDGTV TNSERRISRQ RAFLKAPGEA
RADWAILCDV ARRLGHGEAF AYRSAAEIFR EHAALSAFEN EGTRDFDLGG LAEMSALAYD
AHLPLQWPVP KRGPDARKGR ARLFSDGRFY TFDQRARFVA VQPPALAQPV TEARPLVLNT
GRIRDHWHTM TRTGKSQRLS AHRAVPFVEV HPDDATRFGL SDGGFARVTT DLGQAILEVT
VTDDVLPGSV FVPMHWSDMT ASDGRAAALA RGITDPVSGQ PELKATPASV EAVAYRSRGY
LLTREAHAAP AGWWWARATV SGGSGLLFAT GEGSREMALA IRGMFPGHEL AEYVDHARGL
YRCAVYREDR LVAALSVAPG DRRPDWEIAK GIFASPDIEA IDRRALLSGR AATASAGPVV
CACHGVGLDV ITAAIAAGAG SVEAVGAACK AGTNCGSCIP EIRKLLSPTL ARSAA
|
|---|
| |