Gene Mpop_3179 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_3179 
Symbol 
ID6310643 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp3412958 
End bp3413935 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content70% 
IMG OID642651902 
Producthistone deacetylase superfamily 
Protein accessionYP_001925866 
Protein GI188582421 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGTGG CCCGGCATCT CCGTCTCGCG CACCCGGGAG AAACGGCCCT GAGCACCCTG 
TACGTCACCC ATCCGAGCGC GCTGGAACAC GCGGTTCCCA CCGGCCATCC GGAGCGGCCC
GCCCGCATGC AGGCGGTCGA GCGCGCCCTC GAGGACGAGC GCTTCGCCGC CCTGGTGCGC
TGCCACGCGC CGAAGGCCGA GGCTTCCGTC GCCGAACTCG TCCACCCGGC GGCCTTCGTC
GAGACCATCG TCGCCGCCTC GCCCGACGAG GGCTTCTTCC AGATCGACGG CGACACGCTG
ATGTCGCCCG GCTCGCTCAA CACCTGCCTG CACGCCATCG GCGGATCGAA TCACGCGGTC
GATGCGGTGA TGAAGGGCGA GTGCGCCAAC GCCTTCGTGG CCATGCGCCC GCCCGGCCAT
CATGCCGAGC GCGAGCGCGC CATGGGCTTC TGCCTGTTCA ACCATGCGGC GATCGCCGTG
CGCCATGCCC AGAAGGCGTT CGGTGCCACC CGCGTCGCCC TGGTGGATTT CGACGTCCAC
CACGGCAACG GCTCGCAGGA CATCTTCTGG TCCGACAAAA GCGTGATGTA CGCCTCGACC
CACCAGATGC CGCTGTTCCC CGGTTCGGGC GCGACGGGGG AGCGGGGCGA CCACGACACC
ATCGTCAACG CGCCGCTCAA GGCCTTCGAC GGCAGCGAGA TCTTCCGGGA AGCCTTCGAG
GCGCGGATCC TGCCGCGGCT CGACGCGTTC GCGCCGGATC TCGTGGTGAT CTCGGCCGGG
TTCGACGCGC ACAAGCTCGA CCCGCTGGCC AATATCCAGC TCGAAGAGGC GGATTTCGGC
TGGGCGACGC GCCGGCTGAT GGAGGTCGCG GACCGTCACG CGGGCGGCCG GGTCGTGTCG
ATCCTGGAGG GCGGCTACAG CCTCGACGGG CTCGCCCGCT CGGTCGCCGC GCATGTGGAC
GCGCTGATGG GGCGGTGA
 
Protein sequence
MAVARHLRLA HPGETALSTL YVTHPSALEH AVPTGHPERP ARMQAVERAL EDERFAALVR 
CHAPKAEASV AELVHPAAFV ETIVAASPDE GFFQIDGDTL MSPGSLNTCL HAIGGSNHAV
DAVMKGECAN AFVAMRPPGH HAERERAMGF CLFNHAAIAV RHAQKAFGAT RVALVDFDVH
HGNGSQDIFW SDKSVMYAST HQMPLFPGSG ATGERGDHDT IVNAPLKAFD GSEIFREAFE
ARILPRLDAF APDLVVISAG FDAHKLDPLA NIQLEEADFG WATRRLMEVA DRHAGGRVVS
ILEGGYSLDG LARSVAAHVD ALMGR