| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_3083 |
|---|
| Symbol | |
|---|
| ID | 6311017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 3306549 |
|---|
| End bp | 3308288 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642651809 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001925773 |
|---|
| Protein GI | 188582328 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCG AGGACGATTT CCGCATCCGG CCCGGCCGTA TCCGATCGTC GAGCGCGCAG
CGTGCCAGGC CCTTCATCGC ACAGGCGCTG GCTGCCGCGC AGAAGGCCGG CGCTCGCGTC
TCGCGTTCTG GCCGGATCAG CTCCGGCAAT CGCTCGACCT TCGGGCGGGG CCGAACGGCG
AGTGTTCGCG CCAACCGTCT CCTCACCGGC CGATCGCGTG TCGTCGTCAT CAAGACTCGC
CTGGTGCGCC ATCATGCTCG CACGGCGCCG CTCACGGCCC ATCTCAACTA TCTGCGCCGC
GAGGGCGTGA CCCGTGACGG AGAGAAGGCC CGGTTGTTCG GGCCGGAGAC GGATGAGGTC
GATGGCCGCG CCTTCGCCGA GCGCTGCGGC GACGATCGCC ACCATTTCCG CTTCATCGTC
TCGCCAGAGG ACGCCGTGAA CATGGCGGAC CTCAAATCCT TCACCCGAGA TCTGATGAGC
CAGATGGAGA AGGATCTCGG CACGAAACTC GATTGGGCGG CTGTCGATCA CTGGAATACC
GACAACCCGC ACGTCCACAT CATCCTGCGC GGCCGTGCCG ATGACGGGCA GGACCTCGTG
ATCGCGCGCG ACTACATCAA GGAAGGAATG CGCGCCCGCG CCGCCGACCT CGTCACGCAG
GAATTGGGGC CGCGCACCGA TCTCGACATT CACCGCGCTC TGGAGCGGCA GGTCGAGGCC
GAGCGCTGGA CACAACTCGA CCGCCAGCTT GCCCGCGATG CGCACGCCAC GGGCGTCATC
GACATGGCGC CCGACCGACA AGCCCGGCCT GACGACTATC ATGCGCTCAA GGTCGGACGG
CTGCACAAGC TGGAATCGCT CGGCCTCGCC GTCGAGGTCG GCCCCGGCCA GTGGATGATC
GACAGCAAGG CCGAGGCGAC GCTGCGCGAA CTCGGTGAAC GCGGTGACAT CATCAAGCGG
ATGCACCGGG CGTTGACCGA ACGCGGCATC GAGCGCGGAT CGGCCAGCTA TGTGCTGGCT
GCCGAAAATC TCGATACGCC GATCGTCGGG AGGCTGGTCG ATCGGGGCCT CGACGACGAA
CTGAAGGGCA CAGCCTATGC CGTCGTCGAT GGCGTCGACG GCCGCACCCA CCACATCAAG
CTGCCCGATC TCGATGCGGC CGGCGACAGC GCGCCCGGCT CGATCGTCGA GCTGCGCCGG
TTCGATGACG CGCGGGGGCA ACGTCGCGTC GCCATAGCCG TTCGCTCTGA CCTCGACATC
GATCGCCAGA TCACGGCGTC GGGCGCGACC TGGCTCGACC GCCAGAACAT CGCCCGCGGG
CCGGTTGCGC TGTCGGAAGG CGGTTTCGGC GCCGAGGTGC GGCAGGCGAG GGAACGCCGC
GCCGAACACC TGGTCGATCA GGGCCTCGGC GAGCGGCATG GCCAGAGCAT CACCTTCACC
CGGAGCCTGA TCGACACGCT GCGCCGCCGG GAGCTGGAGG CGCTCGGCGA GAAGGTCGCG
GCGGAAACCG GCCAGCCGTT CACCCGCGCC GCGAGCGGCG AATATGTCGC CGGCTCCTAT
CGGCAGCGCT TCACGCTCGC CTCCGGGCGC TTCGCCATGA TCGACGATGG GCTCGGCTTC
CAGCTCGTGC CCTGGACGCC TTCTCTCGAA ACGCAGCTCG GCCGCCACGT CTCCGGCGTC
GCCCGTAGCG ACGGCGGCGT CGACTGGAGC TTCGGGCGCA AGCGGGGCCT CGGCCTCTAA
|
|---|
| Protein sequence | MSGEDDFRIR PGRIRSSSAQ RARPFIAQAL AAAQKAGARV SRSGRISSGN RSTFGRGRTA
SVRANRLLTG RSRVVVIKTR LVRHHARTAP LTAHLNYLRR EGVTRDGEKA RLFGPETDEV
DGRAFAERCG DDRHHFRFIV SPEDAVNMAD LKSFTRDLMS QMEKDLGTKL DWAAVDHWNT
DNPHVHIILR GRADDGQDLV IARDYIKEGM RARAADLVTQ ELGPRTDLDI HRALERQVEA
ERWTQLDRQL ARDAHATGVI DMAPDRQARP DDYHALKVGR LHKLESLGLA VEVGPGQWMI
DSKAEATLRE LGERGDIIKR MHRALTERGI ERGSASYVLA AENLDTPIVG RLVDRGLDDE
LKGTAYAVVD GVDGRTHHIK LPDLDAAGDS APGSIVELRR FDDARGQRRV AIAVRSDLDI
DRQITASGAT WLDRQNIARG PVALSEGGFG AEVRQARERR AEHLVDQGLG ERHGQSITFT
RSLIDTLRRR ELEALGEKVA AETGQPFTRA ASGEYVAGSY RQRFTLASGR FAMIDDGLGF
QLVPWTPSLE TQLGRHVSGV ARSDGGVDWS FGRKRGLGL
|
|---|
| |