| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_2940 |
|---|
| Symbol | |
|---|
| ID | 6310502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 3165060 |
|---|
| End bp | 3167459 |
|---|
| Gene Length | 2400 bp |
|---|
| Protein Length | 799 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642651666 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001925630 |
|---|
| Protein GI | 188582185 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTGC TGTCGCGACG TACCCAGGAA GCGCCGTCCG ATGCCCCGTC CCCGGAGGAC
GGCGCGGAGG CGGTCGCGCG CCGGTTCGAC TCGCCTCCGA AGGGGCCGGG CTGGATCGGT
GCGGCCGTCG TGGTCACGGC TCTGGTTTCC GCCTCAGTCA CGTTCCTGAT CCTGGCCGGC
ATCATCCAGA TCACGCGGAC GCCGACCTCG GGCGTCGTGC TCCTCGCGGT CAATGCGGCG
CTCGTCCTCG CCCTCGTCGT GGTGATCGCG TGGGAGGCGC GGGTCTTCCT GCATGCCCGG
CGCACCCATG CCTCGGTGGC GCGGCTGCAC ACCCGCATCG TCGGGCTGTT CAGTCTGATC
GCGATCCTGC CGACGATCCT GCTCGCCATC GTCGCCTCGG TCACGATCGA TGTCGGCCTG
TCGCTCGGCT TCACCGACCG GGTCCGCGAC GTGGTGCTCA AATCGGTGCA GGTCGCGGAC
GCCTATCAGG AGAACCACTG CCAGTCGCTC GCCCGCGAGA TCCGCATCTT CGCCGACGAC
CTGACCCGCG CCCGGCCGAA TTTCGATGTG AACCGCGAGT GGTTCGAGGG CTTCATGACG
GTCCGTGCCC AGGCGCTCGG CCTGCCGATC GTCAAGATCA TGCGCGGCCC CAACGAGGTG
GTGGCCCGCG CCAATATCGA CGTGCTCAAG CAGACGCGCC TGCCCTCGGC TGCCGCCTTC
GAGGATGCGG CGAAGTCGAG CGACCCGATC TGCCTGCTGC CGAACGAGGG CCGGGTCTTC
GCCGCGCTGA TGCGGATGCC GGCCTACGAC AACGCCGTGC TCCTGGTGCA GCGCGAGGTG
AGCCAGCTCG CCATCGACTT CCCCGGCGTC GCCCGCGCGG CGGCGGCCGA GTACCTGACC
TACGACGAGC TGCGCCGCTA CGTGCAGATC GCCTTCGCCT CGGTCTTCAT CCTGATCGCG
CTGATCACGC TGCTCTCGGC GGTGTGGTTC GGGCTGAACT TCGCCAACCG CTTCGTCGCC
CCGATCCGCC GGCTCATCAA CGCCGCCGAC GAGGTCGCCG CCGGCAACTT CTACGCCCGC
GTGCCGGCGC GGAAATCGGA CGGCGACCTC GCCCATCTCG GCGAGAGCTT CAACACCATG
ACGCAGGAGC TACGCCGCCA GCACGACGGC CTGCGGGCGG CCAACGATCT GATCGACCGG
CGCCGCCGCT TCACCGAGGC CGTGCTCTCG GGGGTCTCGC CGGGCGTGCT CGGCGTCGAT
GCCGACGGCG TCATCACCAT CGCCAATCCG GGCGCGGAGC GGACGCTGGG GCTCACGGCC
AAGGAACTCG TCGGCCAGCC GCTGACGAAT GTGGTGCCGG AGATCGCCGC CCTGTTCCCC
GAGGCCGAGG GACGCCAGCG CGCTCTGCAG CAGCAGATCC AGCTCGTGCG CGGCGGCCGC
GAGCGCACGA TTGCCGTCCG CGTCACCAGC GAGCAGGCGC AAGGCGAGGC GCGCGGCTAC
GTGGTGACGC TCGACGACAT CACCGATCTC GTCACGGCGC AGCGCACGTC GGCCTGGGCC
GATGTCGCCC GCCGCATCGC CCACGAGATC AAGAATCCGC TGACCCCGAT CCAGCTCTCG
GCCGAGCGTA TCCGGCGCAA GTACGGAAAA GTGATCACCG CCGACAAGGA AGTGTTCGAG
CAGTGCACCG CCACGATCGT GCGGCAGGTG GACGAGATCA AGCGGATGGT GGACGAATTC
TCCTCGTTCG CCCGGATGCC CAAGCCGGCG ATCACGCAGC AGGATCTGGC CGAGATCGCC
CGGCAGAACC TGTTCATGCT GCGCATGGCC CATCCCGATC TGGACTTTCC GTTCGATACG
GTCGGCGCCG ATGCGCAGGG CCGGGTCGTC GCCGCCTTCG ACGTGCGACT CTTCTCGCAG
GCGCTCACCA ACATCCTCAA GAATGCGGTC GAGGCGGTCC AGGCGGTGCC CGAGGACGTG
CTGACGGCCG AGGGCGGCAA GGGCCGGGTC GCCCTGAAGC TGATGGTCGA GGACGCGTTC
GTGGTGATCG AAGTCACCGA CAACGGAAAA GGCTTTCCGG CAGAGGGGCG CCAGCGCCTG
CTCGAACCCT ATATGACGAC CCGCGAGGGC GGGACCGGCC TCGGCCTGGC CATCGTCTCC
AAGGTGCTGG AGGAGCATGG CGGGGGGATC GAACTGAACG ACAACCCGGA GGGGCGCGGC
GGACAGGTCC GCATGCGGCT GCCGCGGGAG GTCGGGCGGG ACGGCGATCA GAATTCCGAG
CCTGGCGCGG GAGGGGGGCG GACACGCTCC GCGGCGCCGG ACGCGCGTGA CGGGACAACG
ATGGACAAGA ATACGGAGGG CGCCATGGAA GCGCGACGCG TCGCGGAGAT GCAGCCATGA
|
|---|
| Protein sequence | MPLLSRRTQE APSDAPSPED GAEAVARRFD SPPKGPGWIG AAVVVTALVS ASVTFLILAG
IIQITRTPTS GVVLLAVNAA LVLALVVVIA WEARVFLHAR RTHASVARLH TRIVGLFSLI
AILPTILLAI VASVTIDVGL SLGFTDRVRD VVLKSVQVAD AYQENHCQSL AREIRIFADD
LTRARPNFDV NREWFEGFMT VRAQALGLPI VKIMRGPNEV VARANIDVLK QTRLPSAAAF
EDAAKSSDPI CLLPNEGRVF AALMRMPAYD NAVLLVQREV SQLAIDFPGV ARAAAAEYLT
YDELRRYVQI AFASVFILIA LITLLSAVWF GLNFANRFVA PIRRLINAAD EVAAGNFYAR
VPARKSDGDL AHLGESFNTM TQELRRQHDG LRAANDLIDR RRRFTEAVLS GVSPGVLGVD
ADGVITIANP GAERTLGLTA KELVGQPLTN VVPEIAALFP EAEGRQRALQ QQIQLVRGGR
ERTIAVRVTS EQAQGEARGY VVTLDDITDL VTAQRTSAWA DVARRIAHEI KNPLTPIQLS
AERIRRKYGK VITADKEVFE QCTATIVRQV DEIKRMVDEF SSFARMPKPA ITQQDLAEIA
RQNLFMLRMA HPDLDFPFDT VGADAQGRVV AAFDVRLFSQ ALTNILKNAV EAVQAVPEDV
LTAEGGKGRV ALKLMVEDAF VVIEVTDNGK GFPAEGRQRL LEPYMTTREG GTGLGLAIVS
KVLEEHGGGI ELNDNPEGRG GQVRMRLPRE VGRDGDQNSE PGAGGGRTRS AAPDARDGTT
MDKNTEGAME ARRVAEMQP
|
|---|
| |