Gene Mpop_2897 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_2897 
Symbol 
ID6310441 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp3121869 
End bp3124721 
Gene Length2853 bp 
Protein Length950 aa 
Translation table11 
GC content69% 
IMG OID642651622 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001925587 
Protein GI188582142 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.491225 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCCTT CACGCCGATC GGCCGGCATT TTGCGGTGGC GCGTGGCCCT CGATGCGGTT 
CTGCGCGGCA CCCGCACGAT TCGCGGCCGC ATCTTCCTCG CCTTCCTGAT GCTGAGCGCG
ATCACCGCGG GGCTCGGCGG CTATGCCGCC CTCGGCATCA TGACGACCGG CGAGCTGGTC
GACAAAACCT ACGATCGCTC GCTGATGTCG ATCAATTATG CCCGCGCCGC CGCCTCCGAC
CTCGCGGCGC TGCAGGCCAC CGTCGCCCGC GCCCGCCTTG CAGGTGACGC CGAGGAGCGG
CGCACGCTCG AAACGCGGAT CGAGCAACTG ACGCAATCCT TCGAGGAGGA TCTGGAGATC
GCCGCCGACC GCGCTCAGTC GGAGCGTGCG ACGCGGGAGG CCGCTGCCGC CAAGGACGCC
GTCACCCACT GGCTCGCCGC TCGGCGCGAG TTCGGTCCCG ATCGGCAGAC GGTGGATGTC
TGGCAGGCGC TCGACGCCCA TGCGGCGGTG GCCGAGCAGC ATATCGACCT GCTCATCAAC
TTCACCGCCG GTGACGGCTT CGCCTACCGG CAGACCGCCC GGGCCGTCGT CGCCCGCGAT
GTGCGGCTCA GCGTCTTCGC GACGGCCCTC GCCATCATTC TCTCGGGAAT CGTCTCGCTC
CTGCTCTTGC GGCAGATCAT GCGCCCGGTG GCCGACGCCT CGACGGTCGC GAGCCGGATC
GCCGCGGGCG AGTTGAGCGT GACGGTGCCC GAAGGCGGTG CCGACGAGTT CGGCGCCTTG
CTGCAGGCGA TGGCGGTGAT GCGCGACAAC ATCGCCGCGA TGATGCAGGC GGAGGTTGCG
CAGCGTCGCT CGGCCCAGAG CCTGCTCGCG GATGCGGTTC AGGGCTCGAT CGAGGGCATC
GTCGTCGTCG ATCCGCAAGG GCGTATCGTT CTGGCCAACG AGCGGGCCGC GGCCCTGCTC
GGGTTCGATC CGGCCGAGAC CGGCCACCGT CCTCTGTCGG AGGCGAGGGG ATCGGCCGTC
GCCGACACCC TTCTCGCCAT GCCCGGCAGC GGCACCCTGA CGGCGGAGGC GCAGTCCGCC
GACGGGCGTT GGCTGCGCAT CAGCCGCAGC CCGACGCGGG AGGGCGGCTT TGTCGCCGTC
TGCAGCGATG TGTCCCTGCT CAAGGAGCAG GAGGATCAAC TCAAGCGCAG CAATTCCCAG
CTCGATGCGG CCCTCAGCAA CATGCTGCAG GGGCTGTGCC TCTACGATGC CGCGGGCGGC
CTGCTCGTCT ACAACCGCCG CTTCTGCGAC ATGCTCGGTC TCGATGCGGG CGAACTTCGG
ACGGGGATGA GCCTCCGCGA GGTGGCCCGC CTCGTCGAAA CCACGTCCAA TGACGGAAGC
GCGTTCGGCC TCCTGATGGA GCAGCAGGCC CTGCTCCACC GCGGCGTGAG TGGATCGCTG
TGCTGCCCGA TCCGGAAGGA CTGCATCGTC TCGCTCAAGC AGCAGCCGAC CGCGGAGGGC
GGCTGGATCG CCACCTACGA GGACGTGACC CAACGCTATG AGGCGGAGGC ACGGATCATC
ACCATGGCGC GCCGGGACGC GCTGACGGGG CTGGCCAACC GCATGGTGTT CGGCGAACGC
CTGGAAGAGG CGGCCGCCCG TCTCGAGGAC GGGTCCGGCG CCGGCTTCGC CACCCTCTGT
CTCGATCTCG ATCGCTTCAA GGAGGTCAAC GACACCCTCG GCCATCCGGT CGGCGACGGC
CTGCTGCGCA GCGTCGCGGA GCGACTGCAG AGCTGCCTGC GGGAGACGGA TCTCGTCGCG
CGCCTGGGCG GTGACGAGTT CGCCATCGTC CAGGCCGGCA CGCATGCGCG CCAGGACGCG
AGCGCCCTGG CCAAGCGCCT GATCGCCGCC TTCCAACAGC CCTTCCTGCT CGACGGCCAC
ACCGTCACCG TCGGCCTCAG CATCGGCATC TCGCTCGCGC CGGAACACGG GACGAGCCCA
GAGAAGCTCC TCAAGAGCGC GGACCTCGCC CTCTACCGGG CCAAGGCGAC CGGCCGGGGC
TGCTGGTCGT TCTTCGAGGA GGAGATGGAC CTCGAACTGC GCAAGCGCCG GGCGATGGAG
AGCGACCTGA GAACGGCGGT CGGCAACGGC GAATTCGAGT TGGTCTTCCA GCCGATCGTG
AAACTCGACC GGCAGCGGAT CGCCACCTGC GAGGCGCTGC TGCGCTGGCG CCATCCCGAG
CGCGGCTACG TCTCCCCCGC CGAGTTCATA CCGCTGGCCG AGGAGACCGG CAGCATCTGC
GAGATCGGCG AATGGGTCCT GCGCAAGGCT TGCAGCGAGG CCGCGAAATG GCCCGGCGGC
ATCGGCGTGG CGGTCAACGT CTCCGCGGTT CAGTTCAAGA ACGCGGCGGT CGTACGGGCG
GTGATGGAGG CGCTCACCGC GAGCGGGCTG CCGGCGCACC GGCTCGAACT GGAGATCACC
GAGTCGGTCC TGCTGAACGA CAGCGTGACG ACGCTGGCGA CGCTTCACAC CCTCAAGCGC
CTCGGCGTGC GGGTGGCCAT GGACGATTTT GGCACCGGCT TCTCATCCCT GAGCTACCTG
CAGAGCTTCC CCTTCGACAA GATCAAGATC GACCAGTCCT TCGTGCGCAA CCTCGGCGAG
ACCGGCAATG CACGGCTGAT CGTGCGCTCG GTGGTCGGCC TCGGCCGCAG TCTCGGCATC
ACGACCACGG CGGAGGGCAT CGAGACCGAG GCACAGCTCG AACAGCTTCG TCTCGAAGGC
TGTGAGGAAG GCCAGGGCTA CCTGTTCAGC CGTCCCGTCC CCTCCGCGAC GATCCGCGAA
CTGGTCTCGA CGCTGGGACG GAATGCGGCC TGA
 
Protein sequence
MNPSRRSAGI LRWRVALDAV LRGTRTIRGR IFLAFLMLSA ITAGLGGYAA LGIMTTGELV 
DKTYDRSLMS INYARAAASD LAALQATVAR ARLAGDAEER RTLETRIEQL TQSFEEDLEI
AADRAQSERA TREAAAAKDA VTHWLAARRE FGPDRQTVDV WQALDAHAAV AEQHIDLLIN
FTAGDGFAYR QTARAVVARD VRLSVFATAL AIILSGIVSL LLLRQIMRPV ADASTVASRI
AAGELSVTVP EGGADEFGAL LQAMAVMRDN IAAMMQAEVA QRRSAQSLLA DAVQGSIEGI
VVVDPQGRIV LANERAAALL GFDPAETGHR PLSEARGSAV ADTLLAMPGS GTLTAEAQSA
DGRWLRISRS PTREGGFVAV CSDVSLLKEQ EDQLKRSNSQ LDAALSNMLQ GLCLYDAAGG
LLVYNRRFCD MLGLDAGELR TGMSLREVAR LVETTSNDGS AFGLLMEQQA LLHRGVSGSL
CCPIRKDCIV SLKQQPTAEG GWIATYEDVT QRYEAEARII TMARRDALTG LANRMVFGER
LEEAAARLED GSGAGFATLC LDLDRFKEVN DTLGHPVGDG LLRSVAERLQ SCLRETDLVA
RLGGDEFAIV QAGTHARQDA SALAKRLIAA FQQPFLLDGH TVTVGLSIGI SLAPEHGTSP
EKLLKSADLA LYRAKATGRG CWSFFEEEMD LELRKRRAME SDLRTAVGNG EFELVFQPIV
KLDRQRIATC EALLRWRHPE RGYVSPAEFI PLAEETGSIC EIGEWVLRKA CSEAAKWPGG
IGVAVNVSAV QFKNAAVVRA VMEALTASGL PAHRLELEIT ESVLLNDSVT TLATLHTLKR
LGVRVAMDDF GTGFSSLSYL QSFPFDKIKI DQSFVRNLGE TGNARLIVRS VVGLGRSLGI
TTTAEGIETE AQLEQLRLEG CEEGQGYLFS RPVPSATIRE LVSTLGRNAA