| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_2897 |
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| Symbol | |
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| ID | 6310441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium populi BJ001 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010725 |
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| Strand | + |
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| Start bp | 3121869 |
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| End bp | 3124721 |
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| Gene Length | 2853 bp |
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| Protein Length | 950 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642651622 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001925587 |
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| Protein GI | 188582142 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.491225 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCTT CACGCCGATC GGCCGGCATT TTGCGGTGGC GCGTGGCCCT CGATGCGGTT
CTGCGCGGCA CCCGCACGAT TCGCGGCCGC ATCTTCCTCG CCTTCCTGAT GCTGAGCGCG
ATCACCGCGG GGCTCGGCGG CTATGCCGCC CTCGGCATCA TGACGACCGG CGAGCTGGTC
GACAAAACCT ACGATCGCTC GCTGATGTCG ATCAATTATG CCCGCGCCGC CGCCTCCGAC
CTCGCGGCGC TGCAGGCCAC CGTCGCCCGC GCCCGCCTTG CAGGTGACGC CGAGGAGCGG
CGCACGCTCG AAACGCGGAT CGAGCAACTG ACGCAATCCT TCGAGGAGGA TCTGGAGATC
GCCGCCGACC GCGCTCAGTC GGAGCGTGCG ACGCGGGAGG CCGCTGCCGC CAAGGACGCC
GTCACCCACT GGCTCGCCGC TCGGCGCGAG TTCGGTCCCG ATCGGCAGAC GGTGGATGTC
TGGCAGGCGC TCGACGCCCA TGCGGCGGTG GCCGAGCAGC ATATCGACCT GCTCATCAAC
TTCACCGCCG GTGACGGCTT CGCCTACCGG CAGACCGCCC GGGCCGTCGT CGCCCGCGAT
GTGCGGCTCA GCGTCTTCGC GACGGCCCTC GCCATCATTC TCTCGGGAAT CGTCTCGCTC
CTGCTCTTGC GGCAGATCAT GCGCCCGGTG GCCGACGCCT CGACGGTCGC GAGCCGGATC
GCCGCGGGCG AGTTGAGCGT GACGGTGCCC GAAGGCGGTG CCGACGAGTT CGGCGCCTTG
CTGCAGGCGA TGGCGGTGAT GCGCGACAAC ATCGCCGCGA TGATGCAGGC GGAGGTTGCG
CAGCGTCGCT CGGCCCAGAG CCTGCTCGCG GATGCGGTTC AGGGCTCGAT CGAGGGCATC
GTCGTCGTCG ATCCGCAAGG GCGTATCGTT CTGGCCAACG AGCGGGCCGC GGCCCTGCTC
GGGTTCGATC CGGCCGAGAC CGGCCACCGT CCTCTGTCGG AGGCGAGGGG ATCGGCCGTC
GCCGACACCC TTCTCGCCAT GCCCGGCAGC GGCACCCTGA CGGCGGAGGC GCAGTCCGCC
GACGGGCGTT GGCTGCGCAT CAGCCGCAGC CCGACGCGGG AGGGCGGCTT TGTCGCCGTC
TGCAGCGATG TGTCCCTGCT CAAGGAGCAG GAGGATCAAC TCAAGCGCAG CAATTCCCAG
CTCGATGCGG CCCTCAGCAA CATGCTGCAG GGGCTGTGCC TCTACGATGC CGCGGGCGGC
CTGCTCGTCT ACAACCGCCG CTTCTGCGAC ATGCTCGGTC TCGATGCGGG CGAACTTCGG
ACGGGGATGA GCCTCCGCGA GGTGGCCCGC CTCGTCGAAA CCACGTCCAA TGACGGAAGC
GCGTTCGGCC TCCTGATGGA GCAGCAGGCC CTGCTCCACC GCGGCGTGAG TGGATCGCTG
TGCTGCCCGA TCCGGAAGGA CTGCATCGTC TCGCTCAAGC AGCAGCCGAC CGCGGAGGGC
GGCTGGATCG CCACCTACGA GGACGTGACC CAACGCTATG AGGCGGAGGC ACGGATCATC
ACCATGGCGC GCCGGGACGC GCTGACGGGG CTGGCCAACC GCATGGTGTT CGGCGAACGC
CTGGAAGAGG CGGCCGCCCG TCTCGAGGAC GGGTCCGGCG CCGGCTTCGC CACCCTCTGT
CTCGATCTCG ATCGCTTCAA GGAGGTCAAC GACACCCTCG GCCATCCGGT CGGCGACGGC
CTGCTGCGCA GCGTCGCGGA GCGACTGCAG AGCTGCCTGC GGGAGACGGA TCTCGTCGCG
CGCCTGGGCG GTGACGAGTT CGCCATCGTC CAGGCCGGCA CGCATGCGCG CCAGGACGCG
AGCGCCCTGG CCAAGCGCCT GATCGCCGCC TTCCAACAGC CCTTCCTGCT CGACGGCCAC
ACCGTCACCG TCGGCCTCAG CATCGGCATC TCGCTCGCGC CGGAACACGG GACGAGCCCA
GAGAAGCTCC TCAAGAGCGC GGACCTCGCC CTCTACCGGG CCAAGGCGAC CGGCCGGGGC
TGCTGGTCGT TCTTCGAGGA GGAGATGGAC CTCGAACTGC GCAAGCGCCG GGCGATGGAG
AGCGACCTGA GAACGGCGGT CGGCAACGGC GAATTCGAGT TGGTCTTCCA GCCGATCGTG
AAACTCGACC GGCAGCGGAT CGCCACCTGC GAGGCGCTGC TGCGCTGGCG CCATCCCGAG
CGCGGCTACG TCTCCCCCGC CGAGTTCATA CCGCTGGCCG AGGAGACCGG CAGCATCTGC
GAGATCGGCG AATGGGTCCT GCGCAAGGCT TGCAGCGAGG CCGCGAAATG GCCCGGCGGC
ATCGGCGTGG CGGTCAACGT CTCCGCGGTT CAGTTCAAGA ACGCGGCGGT CGTACGGGCG
GTGATGGAGG CGCTCACCGC GAGCGGGCTG CCGGCGCACC GGCTCGAACT GGAGATCACC
GAGTCGGTCC TGCTGAACGA CAGCGTGACG ACGCTGGCGA CGCTTCACAC CCTCAAGCGC
CTCGGCGTGC GGGTGGCCAT GGACGATTTT GGCACCGGCT TCTCATCCCT GAGCTACCTG
CAGAGCTTCC CCTTCGACAA GATCAAGATC GACCAGTCCT TCGTGCGCAA CCTCGGCGAG
ACCGGCAATG CACGGCTGAT CGTGCGCTCG GTGGTCGGCC TCGGCCGCAG TCTCGGCATC
ACGACCACGG CGGAGGGCAT CGAGACCGAG GCACAGCTCG AACAGCTTCG TCTCGAAGGC
TGTGAGGAAG GCCAGGGCTA CCTGTTCAGC CGTCCCGTCC CCTCCGCGAC GATCCGCGAA
CTGGTCTCGA CGCTGGGACG GAATGCGGCC TGA
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| Protein sequence | MNPSRRSAGI LRWRVALDAV LRGTRTIRGR IFLAFLMLSA ITAGLGGYAA LGIMTTGELV
DKTYDRSLMS INYARAAASD LAALQATVAR ARLAGDAEER RTLETRIEQL TQSFEEDLEI
AADRAQSERA TREAAAAKDA VTHWLAARRE FGPDRQTVDV WQALDAHAAV AEQHIDLLIN
FTAGDGFAYR QTARAVVARD VRLSVFATAL AIILSGIVSL LLLRQIMRPV ADASTVASRI
AAGELSVTVP EGGADEFGAL LQAMAVMRDN IAAMMQAEVA QRRSAQSLLA DAVQGSIEGI
VVVDPQGRIV LANERAAALL GFDPAETGHR PLSEARGSAV ADTLLAMPGS GTLTAEAQSA
DGRWLRISRS PTREGGFVAV CSDVSLLKEQ EDQLKRSNSQ LDAALSNMLQ GLCLYDAAGG
LLVYNRRFCD MLGLDAGELR TGMSLREVAR LVETTSNDGS AFGLLMEQQA LLHRGVSGSL
CCPIRKDCIV SLKQQPTAEG GWIATYEDVT QRYEAEARII TMARRDALTG LANRMVFGER
LEEAAARLED GSGAGFATLC LDLDRFKEVN DTLGHPVGDG LLRSVAERLQ SCLRETDLVA
RLGGDEFAIV QAGTHARQDA SALAKRLIAA FQQPFLLDGH TVTVGLSIGI SLAPEHGTSP
EKLLKSADLA LYRAKATGRG CWSFFEEEMD LELRKRRAME SDLRTAVGNG EFELVFQPIV
KLDRQRIATC EALLRWRHPE RGYVSPAEFI PLAEETGSIC EIGEWVLRKA CSEAAKWPGG
IGVAVNVSAV QFKNAAVVRA VMEALTASGL PAHRLELEIT ESVLLNDSVT TLATLHTLKR
LGVRVAMDDF GTGFSSLSYL QSFPFDKIKI DQSFVRNLGE TGNARLIVRS VVGLGRSLGI
TTTAEGIETE AQLEQLRLEG CEEGQGYLFS RPVPSATIRE LVSTLGRNAA
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